Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq780 98.7 5e-16 seq6208 89.7 3e-13 seq2226 89.7 3e-13 >seq780 Length=55915 Score = 98.7 bits (108), Expect = 5e-16 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | || ||||||| ||| ||||| | || |||||||||| |||||||| Sbjct 36277 AAATATTAATTTTGTAAAAAAAGAAAGTTGGCTCCAGAGAGGATCGAACTCACGACCTTC 36218 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 ||||||||||||||||||||| ||||||||||||| Sbjct 36217 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTA 36183 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 18296 AAAAAAGAAATCTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 18237 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 18236 GCTCTAACCAACTGAGCTA 18218 >seq6208 Length=7563 Score = 89.7 bits (98), Expect = 3e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 81 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 22 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 21 CTGAGCTA 14 >seq2226 Length=17968 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || |||| | || |||||||||| ||||||||||||||||||||||| Sbjct 1802 TAAAAAA--AATATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 1745 Query 11503 CGCTCTRACCAACTGAGCTA 11522 |||||| ||||||||||||| Sbjct 1744 CGCTCTAACCAACTGAGCTA 1725 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261408260302900