Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq442 104 2e-17 seq296 104 2e-17 >seq442 Length=86436 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||| ||||| | || || || ||||| | ||| || ||||||| ||| || Sbjct 25002 CGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAA--TGTACGAC 25059 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || | |||||||| ||||||| || | || |||||||| ||||| ||||| | Sbjct 25060 CATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCT 25119 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || |||||||| | | ||||||| | ||||| || | || | Sbjct 25120 TATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAA 25179 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || || | ||||| || |||||||||||| Sbjct 25180 TTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 25217 >seq296 Length=113092 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| ||||| |||||||| || || | || || ||||||| ||| || ||| | Sbjct 112875 ACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAA--TGTACGACCATCTT 112932 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| |||||||| | ||||| || | || || ||||| ||||| ||||||||||| | Sbjct 112933 CCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTT 112992 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || |||||||| || | | ||||| | | || || || | |||||||||| Sbjct 112993 GGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTT 113052 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || | ||| || || || || ||||||| Sbjct 113053 TTCCTGTCAAAGTCTTGACGAAAATTTGCATGC 113085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448145365269000