Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1392 223 5e-54 seq2453 217 2e-52 seq3229 172 9e-39 seq945 167 4e-37 seq11687 154 2e-33 seq2 150 3e-32 seq288 104 4e-18 seq17574 84.2 3e-12 >seq1392 Length=31554 Score = 223 bits (246), Expect = 5e-54 Identities = 210/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||| |||||||||||||||||||| |||||||| || Sbjct 30912 CGCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCCAT 30971 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||||||||||| ||||||||| |||| || ||| |||| ||||| | Sbjct 30972 TCGTCGTTTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCTTGATCTACGAAGAAAC 31031 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | | | || |||| |||||| || || || || Sbjct 31032 CCGTGGTGTCTTGAAAGTTTTCTTGGAAAATGTCATCCGTGATGCAGTCACATACACTGA 31091 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| | |||||| ||||||||||||||||||| ||||| Sbjct 31092 ACACGCCAAGAGAAAGACAGTCACAGCTATGGATGTCGTCTATGCATTGAAACGCCAAGG 31151 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 31152 ACGTACTCTCTACGGTTTCGGAGGTTAA 31179 >seq2453 Length=14182 Score = 217 bits (240), Expect = 2e-52 Identities = 209/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||| |||||||||||||||||||| |||||||| || Sbjct 13390 CGCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCCAT 13331 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||||||||||| ||||||||| |||| || ||| |||| ||||| | Sbjct 13330 TCGTCGTTTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCTTGATCTACGAAGAAAC 13271 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | | | || |||| |||||| || || || || Sbjct 13270 CCGTGGTGTCTTGAAAGTTTTCTTGGAAAATGTCATCCGTGATGCAGTCACATACACTGA 13211 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| | ||||| ||||||||||||||||||| ||||| Sbjct 13210 ACACGCCAAGAGAAAGACAGTCACAGCTATGGACGTCGTCTATGCATTGAAACGCCAAGG 13151 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 13150 ACGTACTCTCTACGGTTTCGGAGGTTAA 13123 >seq3229 Length=10175 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | ||| || ||||||||||||||||| || || ||||| || Sbjct 6675 CGCAAAGCGTCATCGTAAGGTTCTACGTGATAACATCCAAGGAATAACGAAACCAGCAAT 6616 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||| |||||||||||||| ||||| | || ||||| | ||||| || | Sbjct 6615 TCGTCGATTGGCACGTCGTGGTGGAGTAAAGCGCATATCAGGATTAATTTATGAGGAAGT 6556 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||||||| | | | || || | |||| || | |||||||| Sbjct 6555 ACGTGGAGTATTGAAGATCTTTTTGGAAAATGTCATTCGTGATTCTGTGACTTATACCGA 6496 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||| ||||| ||||| | ||||| | || |||||| | ||||| ||||| Sbjct 6495 ACATGCAAAACGAAAGACGGTCACGGCTATGGACGTAGTTTATGCACTCAAACGACAAGG 6436 Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAA 16699 || || ||| ||||| |||||| ||||| Sbjct 6435 ACG-AACATTGTATGGATTTGGAGGTTAA 6408 >seq945 Length=46626 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | ||| || ||||||||||||||||| || || ||||| || Sbjct 13417 CGCAAAACGTCATCGTAAGGTTCTACGTGATAACATCCAAGGAATAACGAAACCAGCAAT 13358 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||| |||||||||||||| ||||| | |||||||| | |||||||| | Sbjct 13357 TCGTCGATTGGCACGTCGTGGTGGAGTAAAGCGCATATCTGGATTAATTTATGAAGAAAC 13298 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || || ||| |||| | | | ||||| | |||| || | |||||||| Sbjct 13297 ACGTGGAGTATTAAAGGTCTTTTTGGAAAATGTTATTCGTGATTCTGTGACTTATACCGA 13238 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||||| ||||| || || | ||||| | || |||||| | ||||| ||||| Sbjct 13237 ACATGCTAAACGAAAGACGGTTACGGCTATGGACGTAGTTTATGCACTCAAACGACAAGG 13178 Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAA 16699 || || ||| || || |||||| ||||| Sbjct 13177 ACG-AACATTGTACGGATTTGGAGGTTAA 13150 >seq11687 Length=1125 Score = 154 bits (170), Expect = 2e-33 Identities = 197/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | ||| || ||||||||||||||||| || || ||||| || Sbjct 789 CGCAAAACGTCATCGTAAGGTTCTACGTGATAACATCCAAGGAATAACGAAACCAGCAAT 848 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||| |||||||||||||| ||||| | || ||||| | |||||||| | Sbjct 849 TCGTCGATTGGCACGTCGTGGTGGAGTAAAGCGCATATCAGGATTAATTTATGAAGAAAC 908 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || || ||| |||| | | | || || | |||| || | |||||||| Sbjct 909 ACGTGGAGTATTAAAGGTCTTTTTGGAAAATGTCATTCGTGATTCTGTGACTTATACCGA 968 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||||| ||||| || || | ||||| | || |||||| | || || ||||| Sbjct 969 ACATGCTAAACGAAAGACGGTTACGGCTATGGACGTAGTTTATGCACTCAAGCGACAAGG 1028 Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAA 16699 || || ||| || || |||||| ||||| Sbjct 1029 ACG-AACATTGTACGGATTTGGAGGTTAA 1056 >seq2 Length=721996 Score = 150 bits (166), Expect = 3e-32 Identities = 203/288 (70%), Gaps = 20/288 (7%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||| |||||||||||||||||||| || ||||| || Sbjct 487228 CGCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAACCAGCAAT 487287 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||||||||||| || |||||| | |||||||| | || ||||| | Sbjct 487288 TCGTCGTTTAGCTCGTCGTGGTGGTGTTAAGCGTATTTCTGGATTAATTTACGAAGAAAC 487347 Query 16552 TCGTGATGTTTTGAAGA--------------------TCTTCCTCAAGACCGTTATCCAT 16591 ||||| |||||||| | | ||| | | | || || | | Sbjct 487348 TCGTGGAGTTTTGAAAAAACTCGTGGAGTTTTGAAAGTTTTCTTGGAAAATGTCATTCGT 487407 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 |||||| || ||||| || || || || | |||||||| || |||||||| | || Sbjct 487408 GATGCTGTCACTTATACTGAACATGCCAAGAGGAAGACTGTTACTGCCATGGATGTTGTT 487467 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| ||||| | ||||| | | ||||||| ||||| ||||| Sbjct 487468 TATGCGTTGAAGAGACAAGGAAGAACACTTTATGGATTTGGCGGTTAA 487515 >seq288 Length=114943 Score = 104 bits (114), Expect = 4e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | |||||| |||||||||||||||||||| |||||||| ||| Sbjct 90972 GCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCCATC 90913 Query 16493 CGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||||| Sbjct 90912 CGTCGTTTGGCTCGTCGTGG 90893 >seq17574 Length=667 Score = 84.2 bits (92), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | |||||| |||||||||||||||||||| |||||||| ||| Sbjct 68 GCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCAATC 9 Query 16493 CGTCGT 16498 |||||| Sbjct 8 CGTCGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051405160325