Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1392 223 5e-54
seq2453 217 2e-52
seq3229 172 9e-39
seq945 167 4e-37
seq11687 154 2e-33
seq2 150 3e-32
seq288 104 4e-18
seq17574 84.2 3e-12
>seq1392
Length=31554
Score = 223 bits (246), Expect = 5e-54
Identities = 210/268 (78%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | | |||||| |||||||||||||||||||| |||||||| ||
Sbjct 30912 CGCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCCAT 30971
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| |||||||||||||||| ||||||||| |||| || ||| |||| ||||| |
Sbjct 30972 TCGTCGTTTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCTTGATCTACGAAGAAAC 31031
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| ||||| | ||| | | | || |||| |||||| || || || ||
Sbjct 31032 CCGTGGTGTCTTGAAAGTTTTCTTGGAAAATGTCATCCGTGATGCAGTCACATACACTGA 31091
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | ||||| ||||| | |||||| ||||||||||||||||||| |||||
Sbjct 31092 ACACGCCAAGAGAAAGACAGTCACAGCTATGGATGTCGTCTATGCATTGAAACGCCAAGG 31151
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || ||||| ||| |||||
Sbjct 31152 ACGTACTCTCTACGGTTTCGGAGGTTAA 31179
>seq2453
Length=14182
Score = 217 bits (240), Expect = 2e-52
Identities = 209/268 (78%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | | |||||| |||||||||||||||||||| |||||||| ||
Sbjct 13390 CGCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCCAT 13331
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| |||||||||||||||| ||||||||| |||| || ||| |||| ||||| |
Sbjct 13330 TCGTCGTTTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCTTGATCTACGAAGAAAC 13271
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| ||||| | ||| | | | || |||| |||||| || || || ||
Sbjct 13270 CCGTGGTGTCTTGAAAGTTTTCTTGGAAAATGTCATCCGTGATGCAGTCACATACACTGA 13211
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | ||||| ||||| | ||||| ||||||||||||||||||| |||||
Sbjct 13210 ACACGCCAAGAGAAAGACAGTCACAGCTATGGACGTCGTCTATGCATTGAAACGCCAAGG 13151
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || ||||| ||| |||||
Sbjct 13150 ACGTACTCTCTACGGTTTCGGAGGTTAA 13123
>seq3229
Length=10175
Score = 172 bits (190), Expect = 9e-39
Identities = 201/269 (75%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | ||| || ||||||||||||||||| || || ||||| ||
Sbjct 6675 CGCAAAGCGTCATCGTAAGGTTCTACGTGATAACATCCAAGGAATAACGAAACCAGCAAT 6616
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||| |||||||||||||| ||||| | || ||||| | ||||| || |
Sbjct 6615 TCGTCGATTGGCACGTCGTGGTGGAGTAAAGCGCATATCAGGATTAATTTATGAGGAAGT 6556
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || ||||||||||| | | | || || | |||| || | ||||||||
Sbjct 6555 ACGTGGAGTATTGAAGATCTTTTTGGAAAATGTCATTCGTGATTCTGTGACTTATACCGA 6496
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || ||||| ||||| ||||| | ||||| | || |||||| | ||||| |||||
Sbjct 6495 ACATGCAAAACGAAAGACGGTCACGGCTATGGACGTAGTTTATGCACTCAAACGACAAGG 6436
Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAA 16699
|| || ||| ||||| |||||| |||||
Sbjct 6435 ACG-AACATTGTATGGATTTGGAGGTTAA 6408
>seq945
Length=46626
Score = 167 bits (184), Expect = 4e-37
Identities = 200/269 (74%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || |||||||| | ||| || ||||||||||||||||| || || ||||| ||
Sbjct 13417 CGCAAAACGTCATCGTAAGGTTCTACGTGATAACATCCAAGGAATAACGAAACCAGCAAT 13358
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||| |||||||||||||| ||||| | |||||||| | |||||||| |
Sbjct 13357 TCGTCGATTGGCACGTCGTGGTGGAGTAAAGCGCATATCTGGATTAATTTATGAAGAAAC 13298
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || || ||| |||| | | | ||||| | |||| || | ||||||||
Sbjct 13297 ACGTGGAGTATTAAAGGTCTTTTTGGAAAATGTTATTCGTGATTCTGTGACTTATACCGA 13238
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| |||||||| ||||| || || | ||||| | || |||||| | ||||| |||||
Sbjct 13237 ACATGCTAAACGAAAGACGGTTACGGCTATGGACGTAGTTTATGCACTCAAACGACAAGG 13178
Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAA 16699
|| || ||| || || |||||| |||||
Sbjct 13177 ACG-AACATTGTACGGATTTGGAGGTTAA 13150
>seq11687
Length=1125
Score = 154 bits (170), Expect = 2e-33
Identities = 197/269 (73%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || |||||||| | ||| || ||||||||||||||||| || || ||||| ||
Sbjct 789 CGCAAAACGTCATCGTAAGGTTCTACGTGATAACATCCAAGGAATAACGAAACCAGCAAT 848
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||| |||||||||||||| ||||| | || ||||| | |||||||| |
Sbjct 849 TCGTCGATTGGCACGTCGTGGTGGAGTAAAGCGCATATCAGGATTAATTTATGAAGAAAC 908
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || || ||| |||| | | | || || | |||| || | ||||||||
Sbjct 909 ACGTGGAGTATTAAAGGTCTTTTTGGAAAATGTCATTCGTGATTCTGTGACTTATACCGA 968
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| |||||||| ||||| || || | ||||| | || |||||| | || || |||||
Sbjct 969 ACATGCTAAACGAAAGACGGTTACGGCTATGGACGTAGTTTATGCACTCAAGCGACAAGG 1028
Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAA 16699
|| || ||| || || |||||| |||||
Sbjct 1029 ACG-AACATTGTACGGATTTGGAGGTTAA 1056
>seq2
Length=721996
Score = 150 bits (166), Expect = 3e-32
Identities = 203/288 (70%), Gaps = 20/288 (7%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | | |||||| |||||||||||||||||||| || ||||| ||
Sbjct 487228 CGCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAACCAGCAAT 487287
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| | |||||||||||||| || |||||| | |||||||| | || ||||| |
Sbjct 487288 TCGTCGTTTAGCTCGTCGTGGTGGTGTTAAGCGTATTTCTGGATTAATTTACGAAGAAAC 487347
Query 16552 TCGTGATGTTTTGAAGA--------------------TCTTCCTCAAGACCGTTATCCAT 16591
||||| |||||||| | | ||| | | | || || | |
Sbjct 487348 TCGTGGAGTTTTGAAAAAACTCGTGGAGTTTTGAAAGTTTTCTTGGAAAATGTCATTCGT 487407
Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651
|||||| || ||||| || || || || | |||||||| || |||||||| | ||
Sbjct 487408 GATGCTGTCACTTATACTGAACATGCCAAGAGGAAGACTGTTACTGCCATGGATGTTGTT 487467
Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| ||||| | ||||| | | ||||||| ||||| |||||
Sbjct 487468 TATGCGTTGAAGAGACAAGGAAGAACACTTTATGGATTTGGCGGTTAA 487515
>seq288
Length=114943
Score = 104 bits (114), Expect = 4e-18
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | |||||| |||||||||||||||||||| |||||||| |||
Sbjct 90972 GCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCCATC 90913
Query 16493 CGTCGTCTGGCTCGTCGTGG 16512
|||||| |||||||||||||
Sbjct 90912 CGTCGTTTGGCTCGTCGTGG 90893
>seq17574
Length=667
Score = 84.2 bits (92), Expect = 3e-12
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | |||||| |||||||||||||||||||| |||||||| |||
Sbjct 68 GCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCAATC 9
Query 16493 CGTCGT 16498
||||||
Sbjct 8 CGTCGT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79051405160325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |