Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq10 219 7e-52 >seq10 Length=552578 Score = 219 bits (242), Expect = 7e-52 Identities = 498/745 (67%), Gaps = 47/745 (6%) Strand=Plus/Plus Query 193461 CAGGATGGATCTTATCTTGCCGAGTTTCTTTTGTCT-AAGGGATATGAAGTTCATGGTAT 193519 ||||||||||| |||||||| || || ||| || || || |||||||||||||| || Sbjct 299976 CAGGATGGATCATATCTTGCAGAATT-CTTACTTCAGAAAGGCTATGAAGTTCATGGAAT 300034 Query 193520 TGTAAGGAGAAGTTCCCTAATCAATACTCATAGAATTGATCATATCTATGAGAAG----- 193574 | || ||||||||| ||||||| || ||||| || ||| | ||| | || Sbjct 300035 AATTAGAAGAAGTTCCAGTTTCAATACACACAGAATAGAGCATTTATATCAAAATCCAGT 300094 Query 193575 -----ATCA------------CT-----CTTCATTATGGAGATCTAACTGATCCTGTAAA 193612 |||| || ||||||||||| ||| | || ||| || | Sbjct 300095 TTCACATCAAGAGGGTGCATCCTTTAAACTTCATTATGGTGATATGACGGATA--GTTCA 300152 Query 193613 TGTTATGGGTGTCATTAGGGC---AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCA 193669 |||| | | | |||| | ||| |||| | || || |||||||||| ||| || Sbjct 300153 TGTT-TAGTTAAGATTATTGTTCAAGTGAAACCAACGGAAATTTATAATCTTGCTGCACA 300211 Query 193670 AAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGG 193729 | |||||| ||| | || ||||| | || ||||| || | || || | |||| Sbjct 300212 ATCTCATGTCAAAATCTCATTTGACTTAAGTGAATATACAGCTGAAGTGGACGGCGTAGG 300271 Query 193730 AACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTA 193789 ||| | | ||||||| || || | | | ||| |||| || | ||| | | || Sbjct 300272 AACATTGCGTCTACTTGATGCTATTAGAACTTGTGGATTGGATCAACAAGTTAGATTTTA 300331 Query 193790 TCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCAC 193849 |||||||||||| ||| ||||||| || | | ||||||| | | || | || Sbjct 300332 TCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAGAC 300391 Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909 |||||| ||||| | ||| |||| ||||| || | ||||| || |||||||| | Sbjct 300392 ACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCATTAT 300451 Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATC 193969 ||||| ||||| | || || | | || || ||||||| | || ||||| ||||| Sbjct 300452 AAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATC 300511 Query 193970 TCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTC 194029 ||||| ||||| || | || || || | || ||||| | | | |||| || || Sbjct 300512 GCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAATTTC 300571 Query 194030 TGTTGGATTACAG----AAG-ATTCTT-TATCTTGGTAATCTTAATGCTAAGAGGGATTG 194083 |||| || ||| |||||| | |||||||||||| | | || | ||||| Sbjct 300572 ------ATTAAAGCAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTG 300625 Query 194084 GGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGA 194143 ||| || |||||||| || || ||||| |||||| | ||||||||||||||| | || || Sbjct 300626 GGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGA 300685 Query 194144 TGATTATGTGATTGCTACAGGTGAA 194168 |||| ||| ||||||||||| ||| Sbjct 300686 AGATTTTGTAATTGCTACAGGCGAA 300710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807292492199000