Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq119 253 2e-62 >seq119 Length=197918 Score = 253 bits (280), Expect = 2e-62 Identities = 594/890 (67%), Gaps = 14/890 (2%) Strand=Plus/Plus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 || |||||||| ||||||| |||||| | |||| | ||||||| ||| | ||| Sbjct 167101 TAGAAATCAGCGTCTAATGTGAAAACTTGTTCTTGACGACTAGACATAACTCCACTCTTT 167160 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| |||| ||| || |||||| || |||||||| || || | ||| ||| ||||| Sbjct 167161 TGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCC 167220 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307 ||||| |||||||||| | ||| | | ||||| | |||| ||| ||||| Sbjct 167221 ATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCCAATAAA 167280 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 ||| || ||||||||||| || ||| |||||| ||||||||||| || | || || Sbjct 167281 TGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACATCTTA 167340 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTT 21427 || ||||| || | || ||||| || || || || || || || || | Sbjct 167341 ACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATTTCA 167400 Query 21428 ATTATCCTAGATGTACTAGGGGGATACAAT---AATTGTTTAAACATCAAACATGCAAAA 21484 | || || | | || || | | | | ||||| |||| || |||||||| Sbjct 167401 ACTACTCT---TTCCTTTGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCAAAG 167457 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 |||| ||| | ||||| || || || | |||||| |||||||| || || |||||| Sbjct 167458 TCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGCATT 167517 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTC 21603 ||||||||||| || | ||||||||| | ||||| ||| || ||||||||| || || Sbjct 167518 AATCCTCTCTTCTTAATCCAAAATATAGCTGCAAA-GCTACCACTAAAGAAAATCCCTTC 167576 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTA-TGTAGATTCTTTATCCAATATCCATT 21662 || || ||||| |||| | ||||||||| | | | |||||| | ||||||| | Sbjct 167577 GACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCT-GGATATCCAAT 167635 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAGA 21721 || ||||| | ||||| | |||| ||| || ||| ||||| || || || |||| Sbjct 167636 TTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAGA 167695 Query 21722 TGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781 | | | | | |||| | || ||||| || || Sbjct 167696 AG-TCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAG 167754 Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841 |||| |||||| || || || || ||||| || || ||| || |||| | |||||| Sbjct 167755 TGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACT 167814 Query 21842 T-CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAA 21900 | | || | ||| || | | || || |||||||| || |||||| || ||||| || Sbjct 167815 TCCTGACTGAAA-CGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAA 167873 Query 21901 TGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAA 21960 || |||| || ||||||| || || ||| | | || ||||| ||| | Sbjct 167874 AGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCTTCCAT 167933 Query 21961 ATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010 ||||||||||||||| ||||| || |||||| ||||| || ||||| Sbjct 167934 ATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTGGCTTCAGCCT 167983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531727766021000