Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq343 497 1e-135 seq119 269 3e-67 >seq343 Length=103200 Score = 497 bits (550), Expect = 1e-135 Identities = 1060/1575 (67%), Gaps = 35/1575 (2%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 |||||||| || |||| || |||||||| ||||| || || | |||||||||||||| Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || || ||||| ||| |||| | || || |||| ||| ||||| | || |||||| Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 || || || || ||||| | || |||| ||||| || ||||| | ||||||| Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGG 62250 |||| |||||||| | || ||||| ||||||| |||| || |||| || | Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278 Query 62251 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 | ||| || ||| ||||| | ||||| || || |||| |||||| | || || | Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 || | | | ||||| ||||||| ||||||||||| ||| | || | ||| | | Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 ||| |||||| || || ||||| | ||||||||| |||||||| ||||||||||||| Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62490 | |||||||| ||||| | || | ||||| ||||| | || | ||||| |||| Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518 Query 62491 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAA 62550 |||||| |||||||| ||| | ||| | || ||||| | Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578 Query 62551 TACCGTT--ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608 ||| || || || || |||| | || || || |||||||| | || |||| Sbjct 5579 CACCTTTTGAC-ACCGGAC-ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636 Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62668 |||||| || | ||| |||||||| |||||||| ||||| || || | | ||||| || Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696 Query 62669 TTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62725 || ||||| | || ||| |||| | | | |||||| || || || ||||| Sbjct 5697 TTTCGCTTC---GTTAGATTCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCC 5753 Query 62726 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62785 |||||| ||||| || ||||| | |||||| || || || ||||||| || || Sbjct 5754 TTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGG 5813 Query 62786 ATAATAATTAATATCTATAATTTTATTGAGAT---TTCTGACAATTACTTTGACCACATC 62842 ||| ||||| | | ||||||||||| | || || |||| ||| |||| || || Sbjct 5814 ATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTC 5870 Query 62843 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATT-------ACAAACATGTTCAAGGCAA 62895 ||||| |||| |||| ||| || | | || ||| |||||||| || || |||| Sbjct 5871 CTTCAATTTGTGAAAGTCATAT-TCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAA 5929 Query 62896 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62955 ||||| | ||||||||| || || |||| | | |||||||| ||| || || | Sbjct 5930 TTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTAC 5989 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | | ||| ||| || || || | ||| |||||||| || ||| || | || Sbjct 5990 ATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAAT 6049 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 ||||||| || || | || ||||||||||| | |||| || || || || ||| | Sbjct 6050 CCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACA 6109 Query 63076 CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATC 63135 || | ||||||| | | | || || | |||| ||| || | ||| | | Sbjct 6110 AATCTTGTGCCTTTACTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTT 6169 Query 63136 GTTCGAACTCGTCTCCCCAAAC-ATTGTCCAA-TCCAGGACATTCATCCGGACACATCAA 63193 | || || ||| || || ||| || || |||| || |||||||| || Sbjct 6170 TCACAAATTC--CTCACCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAA 6227 Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 |||||| | | | | | || || ||| || | ||| |||||||| | || Sbjct 6228 TGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATA 6287 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||| | ||||| | ||| ||| || ||||| ||||| || || | ||| || || | Sbjct 6288 AAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTC 6347 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | ||||||| |||||| |||||||| ||||| || | | || || ||||| ||||| Sbjct 6348 AAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCC 6407 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 || || || | || | ||||| ||||| || ||||| |||||||||| || || || Sbjct 6408 ACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCATT 6467 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 ||| || ||||| ||||| | ||||| |||| | || ||||| | || | Sbjct 6468 TGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAAC 6527 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| ||||| ||||| ||| |||||||||||| ||||||| || ||||| ||||| Sbjct 6528 ACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATACC 6587 Query 63554 CTCTATGCTATCATC 63568 ||| || |||||| Sbjct 6588 CTCAATAGAATCATC 6602 >seq119 Length=197918 Score = 269 bits (298), Expect = 3e-67 Identities = 567/834 (68%), Gaps = 15/834 (2%) Strand=Plus/Plus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 |||||||||||| | ||||| |||||||| || | |||||| || || || || || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 33057 TTCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAA 33115 || | ||| ||| |||||| |||| | || ||||| | |||||| | ||| | || Sbjct 167202 CTCAAGTGAAATAAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACTTTATCAA 167260 Query 33116 ATCCCAATTCA-GAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCA 33174 |||||||||| ||| ||| ||| || || |||||||| || |||| | ||| Sbjct 167261 GTCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCA 167319 Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234 |||||||| || | | ||||||||||| || |||| | |||||| | ||||| | Sbjct 167320 CAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTT 167379 Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT---AAATGT 33291 || || ||||| ||||| | ||| | ||| | ||||| | | | | |||| Sbjct 167380 ACAGCCTCTGTGATAAT---TTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGT 167436 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || |||| || ||||| || || | || || || |||||||| ||| ||||| || Sbjct 167437 TTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTT 167496 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 ||||| || | || ||||||| || | ||| |||| ||||||||| | || || Sbjct 167497 GAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTA 167556 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 ||| |||||| || ||||| || || ||||| ||||||| || || ||| | || Sbjct 167557 CCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCA 167616 Query 33472 CT-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | | || |||||| ||| |||||| || |||||||| || ||||| || | || Sbjct 167617 TTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTC 167676 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 || || ||||| || | ||| | || |||| ||| |||||| || || || Sbjct 167677 TCAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAAT 167736 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 | ||||| ||||| || | ||||| || || || || ||||| ||||| ||| | Sbjct 167737 ATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGA 167796 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCG 33708 || || | || || ||||| || || || || ||||| ||||| || || || Sbjct 167797 GCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCA 167856 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAG 33767 ||| || ||||| || || |||||||| ||||||| | | | | | | || Sbjct 167857 TCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCT-TGAG 167915 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 || ||||| || | |||||||| |||| ||| ||||| || |||||||| || Sbjct 167916 ATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622744547489000