Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq767 244 3e-59 seq343 181 3e-40 seq933 84.2 6e-11 >seq767 Length=55330 Score = 244 bits (270), Expect = 3e-59 Identities = 411/586 (70%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 111311 TCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCT 111370 ||| |||||| | || ||||| || ||| || |||| ||| ||| ||||| ||||| Sbjct 37397 TCAATTTCCATTGCTTACAACCAAACGAGTATTTTGGCGAGGAGTTGCTGAAGAGCTTCT 37456 Query 111371 GTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTG 111430 ||||| | ||| ||| |||| || || || || ||| |||||||||| Sbjct 37457 ATGGTTCGTAAAAGGATCCACAGATGCTAAATTGCTACAGGCGAAGAATATAAAAATTTG 37516 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGG 111490 ||| ||||| | | ||||| || || ||| || ||| || || ||| || Sbjct 37517 GGACGGAAACAGTACGCGTGAATTCCTTGATGCATCCGGTTTTCATGATCGTCAAGTTGG 37576 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||| | || |||||||| |||||||| ||||| || |||||||| | || |||| ||| Sbjct 37577 TGATTTGGGTCCAGTTTATGGATTTCAGTGGCGACATTTTGGTGCCAAATATAAAA-CAT 37635 Query 111551 GC-ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 || | || |||||| || |||| ||| |||||| || |||||||||| | || | Sbjct 37636 GCGATGATGAATATGAAGGCCAAGGAATTGACCAATTAAAGGATGTCATTGAACGCATCA 37695 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATG-CATTGGAA 111668 | ||| |||| | |||||| ||||| |||| |||||||| ||| | |||| | Sbjct 37696 AAGCCAATCCAAATGATCGTCGTATTATATTGAGCGCATGGAATCCAGTGGACATT-CCA 37754 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||||||||||||||||||| | | || |||||||| | | | || || | Sbjct 37755 CAAATGGCACTTCCACCATGTCACTGTCTCGTTCAATTTTATGT-CGCTAATGG-TGAAT 37812 Query 111729 TCA--TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTG 111786 | | |||||| | || || |||| |||||||| |||||||| ||||| || ||||||| Sbjct 37813 TGAGCTGCCAATTATACCAAAGATCAGCTGATATGGGTCTTGGAGTTCCTTTCAATATTG 37872 Query 111787 CAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAAT 111846 || || || || | || | | | || |||||| |||||||| | || || ||||| | Sbjct 37873 CATCGTATGCCTTATTGACGTACATGATTGCTCATGTTACAAATTTGAAGCCTGGTGATT 37932 Query 111847 TCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892 | |||| | | || ||||| ||| ||||||| || |||| ||| Sbjct 37933 TTGTTCATACTTTTGGCGATGCTCATATTTACACGAATCACACTGA 37978 >seq343 Length=103200 Score = 181 bits (200), Expect = 3e-40 Identities = 988/1560 (63%), Gaps = 36/1560 (2%) Strand=Plus/Minus Query 363601 TCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTT 363660 || || ||||| | ||| |||| || ||||| || |||||||| | ||| ||| | Sbjct 6629 TCCTCATGCTTCTTACTATCAATGTCAGATGATTCTATTGAGGGTATTTATGATACATTA 6570 Query 363661 AAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG-- 363718 || | || || | || ||| ||||| ||||||||||| || || || Sbjct 6569 AAACAATGCGCATTAATAAGCAAATCAGCAGGTGGAATTGGTGTTA--ATGTTCATTGCA 6512 Query 363719 TTCGTGCACA--GAACAGTTACATTCGCGGCACAGG-GGGATACTCGAATGGGCTGGTTC 363775 |||| ||| | ||||| || || || ||| ||||| || ||||| || |||| Sbjct 6511 TTCGAGCAAAAGGAACA--TATATAGCTGGTACAAATGGGATT-TCAAATGGCCTTGTTC 6455 Query 363776 CCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCA 363835 | ||| | | || | | ||||| || | || || ||||| |||||| || || Sbjct 6454 CAATGTTAAGAGTATACAATAATACCGCACGTTATGTTGACCAAGGTGGAAATAAACGTC 6395 Query 363836 AAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGC 363895 ||| |||||||| || ||| | || ||| |||| ||||||||||| ||||| || Sbjct 6394 CAGGCGCGTTTGCAATATATTTGGAACCTTGGCATGGTGATATTTTTGAATTTCTGGATT 6335 Query 363896 TCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 | |||||| || |||||||| ||| | | || | || |||| |||||| | ||| Sbjct 6334 TAAAGAAAAATACTGGAAAAGAAGAAGTCAGAGCTAGAGACATGTTTTATGCATTGTGGA 6275 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCAC 364015 || | || || ||| || || || | | | |||||| | | || || Sbjct 6274 TTCCAGATTTGTTCATGCGTCGGGTTGAAAACAATGAAATGTGGTCATTAATGTGTCCTA 6215 Query 364016 ACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 | |||| ||||||| || | ||||| || | ||| || || ||| | Sbjct 6214 ATAGTAGTCCCGGTCTTTTTGAATCGTACGGTGAGGAATTTGTGAAACTTTATGAAGGCT 6155 Query 364076 ATGAATCGGAGGGAAAGGCT---CGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCC 364131 ||||| | || |||| | | ||| ||| || ||||| | | ||||| || Sbjct 6154 ATGAAGCAGAAGGAAGGTATATTCGTCAAGTAAAG----GCACAAGATTTGTGGTTCGCA 6099 Query 364132 ATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 ||||| || | || | || || || ||||| |||||| |||| || ||||| |||||| Sbjct 6098 ATCATTGAGGCTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAAC 6039 Query 364192 CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGAT 364250 || || || || || ||| | ||||| ||||| | | | | || ||||||| || || Sbjct 6038 CGGAAATCAAATCAACAGAATCTTGGGACAATAC-GTTGTTCGAATTTATGTACGGAAAT 5980 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | |||| | | || || ||| || ||||| | || || || || | Sbjct 5979 AGTACAATATTCAAGTAAGGATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTTAAA 5920 Query 364311 GGCGTTTGTAAAAGA---TGGTACT---TTTGACCACCAGCATCTTTATGACGTAACCTA 364364 |||||| ||| | | | | | |||| || | | | || || || | Sbjct 5919 TATGTTTGTCAAACAAAATCGAAGAGAATATGACTTTCACAAATTGAAGGAAGTTACAAA 5860 Query 364365 TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC 364424 | || | ||| | | || |||| || ||||| ||||| || ||||| Sbjct 5859 AATAGTCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAAGC 5800 Query 364425 CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484 | || || || | | ||||| || ||||| |||| || || || | || || | Sbjct 5799 TAAACGGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGATGC 5740 Query 364485 TTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 |||||| || | | ||| ||| ||| || || || | ||||| | | || Sbjct 5739 TTTTATTTTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATTTAAATCAACAAAT 5680 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATG-ACTGCTTCGTGTGATTTGGCAAAAACCAA-- 364601 ||||||||||| |||| || ||| || | | | | ||||| || ||| || ||| Sbjct 5679 ATTTGAAACAATTTATTATGGTGCATTGGAGTCCAGC-TGTGAATTAGCAGAA--CAATT 5623 Query 364602 GGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCT 364661 |||| || ||||| || || | || | || | || ||| || | |||| | Sbjct 5622 GGGACCATATGAGACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATAT 5563 Query 364662 ATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAA 364721 ||| || || || | | ||| | ||||| | ||| || |||| || Sbjct 5562 GTGGGATAAGACTCCCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAATTAAAAA 5503 Query 364722 GCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGAT 364781 | |||| || || || ||| | | || || ||||| || || || ||||| ||||| Sbjct 5502 GTTTGGTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGAT 5443 Query 364782 CCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCT 364841 | || || || ||| |||| ||||| | ||||| ||| ||||| || || ||||| Sbjct 5442 TTTGGGTAATAATGAGAGCTTTGAACCTTACACAAGTAATGTTTATAATCGTCGTGTTCT 5383 Query 364842 TTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCT 364901 || ||||||| || |||||| | | || |||||||| | | || || || | Sbjct 5382 CAGTGGTGAATTTCAAGTTGTTAATCACCATCTTATCAAGGATTTGACTGAACGTGGTTT 5323 Query 364902 GTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 |||| |||| ||||||||| | || || || ||||||||| | |||| ||| Sbjct 5322 ATGGGATGACGATATGAAGAACAAAATTATTGCAAATAATGGTTCAATACAGACTATTGA 5263 Query 364962 AGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAAC 365021 | ||||||| ||| | || ||| || ||||| || |||||||||||| | || Sbjct 5262 GCAAATTCCAGATGATATAAAAAATATATATAAAACGGTTTGGGAAATTTCCGTCAAGAC 5203 Query 365022 TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGT 365081 | ||| | ||| | |||||||| || |||||||| || || ||||||||||| | Sbjct 5202 ACAAATTCAAATGTCTGCCGATCGTGGAGCTTTTATAGACCAAAGTCAGTCGTTTAA--T 5145 Query 365082 ATTCATG--ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 ||||||| || | || | | | || | || ||||| ||||| ||||| |||||| Sbjct 5144 ATTCATGTAGCTGAACCCAATTATGGGAAATTAACGTCCATTCATTTTTACGGATGGAAA 5085 >seq933 Length=47053 Score = 84.2 bits (92), Expect = 6e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 13097 TTTTCAAAACAGGTGGCTTTCCGTCAAAAACATAGACGGGTTTAATTCCTGCTTCAATTA 13156 |||||| | | ||||||||||| ||||||||||| || || |||||||| ||| | | Sbjct 20520 TTTTCATATCTGGTGGCTTTCCATCAAAAACATAAACCGGCTTAATTCCATTTTCCAAAA 20579 Query 13157 ATCGAATGGTTCGGTAAAAAATACCTGTTAAATGTGAAGTCACTTCACC 13205 |||||| || || |||||||| || | |||||||| || |||||| Sbjct 20580 GTCGAATTGTACGATAAAAAATGCCCATCAAATGTGATGTTGTTTCACC 20628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302919002851550