Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 268 6e-67 seq299 140 2e-28 seq442 107 1e-18 seq296 86.0 4e-12 >seq1 Length=756357 Score = 268 bits (296), Expect = 6e-67 Identities = 326/442 (74%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || ||||||||||| | ||| | || |||||||||||||| Sbjct 749288 ATGGGAACTTTAAATGTCAATCGTAATGTTACTGACCTTTATTATCGCTACAAAATGCCC 749229 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 || || || ||||| || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 749228 CGAATTTGTGCCAAAGTTGAGGGCAAGGGAAATGGCATCAAAACTGTCATTGTCAATATG 749169 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| |||||||| | || || || || || || || |||||||| || ||| Sbjct 749168 GCAGAAGTTGCTAAGGCATTAAATCGTCCAGCAACATATCCAACTAAATATTTTGGATGC 749109 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 |||||||| ||||| || ||||||||||| || || ||||| || ||||| ||||||||| Sbjct 749108 GAACTTGGAGCTCAAACTCAGTTTGATCATAAGAATGAGCGTTTTATCGTCAACGGATCG 749049 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 ||| | | |||| |||| ||||| |||||||| || ||||| |||| || | ||| Sbjct 749048 CATGATGCATCCAAATTGCAAGACTTGCTTGACGGATTCATTCGAAAGTACGTCTTATGT 748989 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTG-TGTCTACCAAGAGAAACACCATCTC 6520 | ||||| || || || || || || | | || |||| | |||| | |||||||| Sbjct 748988 CCCGAATGTGACAATCCTGAAACAGACTTGACTGTTGTC-GCTAAGAAGGAAACCATCTC 748930 Query 6521 TCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCACACAAACTCAACAC 6580 || |||||||||| || || || ||||| | | | || || ||| |||| || Sbjct 748929 GCAAAGCTGCAAAGCTTGTGGATATCATGGATTGATCAAAGTACAGCATAAAGTCAATAC 748870 Query 6581 CTTCATACTGAAGAATCCTCCA 6602 |||||| |||| ||||| ||| Sbjct 748869 CTTCATTTTGAAAAATCCACCA 748848 >seq299 Length=112621 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 105489 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 105548 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 105549 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 105583 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 107791 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 107850 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 107851 GGTAATATTTAGCCTTA 107867 >seq442 Length=86436 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||||| || ||||| || ||| ||||| || ||||| || Sbjct 24989 ACCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCT 25048 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || |||||||||||||| ||||| || | || |||||||| | || Sbjct 25049 CAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 25108 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || ||| || ||| ||||| | | || || || || Sbjct 25109 AATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGAC 25168 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| | ||||| || ||||||||||||||||| ||||| ||||||||| Sbjct 25169 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 25217 >seq296 Length=113092 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | || || || || |||||||| || ||| ||| | || || Sbjct 112875 ACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTCC 112934 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||||||||| || || || | || ||||| || | || | ||||||||||| Sbjct 112935 AATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 112994 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| ||||| | | || ||| |||||||||||||| || ||||| Sbjct 112995 ATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTTTT 113054 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || ||||| || |||||| Sbjct 113055 CCTGTCAAAGTCTTGACGAAAATTTGCATG 113084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334840961551775