Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 268 6e-67
seq299 140 2e-28
seq442 107 1e-18
seq296 86.0 4e-12
>seq1
Length=756357
Score = 268 bits (296), Expect = 6e-67
Identities = 326/442 (74%), Gaps = 2/442 (0%)
Strand=Plus/Minus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| || | || || ||||||||||| | ||| | || ||||||||||||||
Sbjct 749288 ATGGGAACTTTAAATGTCAATCGTAATGTTACTGACCTTTATTATCGCTACAAAATGCCC 749229
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
|| || || ||||| || ||||| |||||||| || || ||||| ||||||||||| |||
Sbjct 749228 CGAATTTGTGCCAAAGTTGAGGGCAAGGGAAATGGCATCAAAACTGTCATTGTCAATATG 749169
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
| ||||| |||||||| | || || || || || || || |||||||| || |||
Sbjct 749168 GCAGAAGTTGCTAAGGCATTAAATCGTCCAGCAACATATCCAACTAAATATTTTGGATGC 749109
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401
|||||||| ||||| || ||||||||||| || || ||||| || ||||| |||||||||
Sbjct 749108 GAACTTGGAGCTCAAACTCAGTTTGATCATAAGAATGAGCGTTTTATCGTCAACGGATCG 749049
Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461
||| | | |||| |||| ||||| |||||||| || ||||| |||| || | |||
Sbjct 749048 CATGATGCATCCAAATTGCAAGACTTGCTTGACGGATTCATTCGAAAGTACGTCTTATGT 748989
Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTG-TGTCTACCAAGAGAAACACCATCTC 6520
| ||||| || || || || || || | | || |||| | |||| | ||||||||
Sbjct 748988 CCCGAATGTGACAATCCTGAAACAGACTTGACTGTTGTC-GCTAAGAAGGAAACCATCTC 748930
Query 6521 TCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCACACAAACTCAACAC 6580
|| |||||||||| || || || ||||| | | | || || ||| |||| ||
Sbjct 748929 GCAAAGCTGCAAAGCTTGTGGATATCATGGATTGATCAAAGTACAGCATAAAGTCAATAC 748870
Query 6581 CTTCATACTGAAGAATCCTCCA 6602
|||||| |||| ||||| |||
Sbjct 748869 CTTCATTTTGAAAAATCCACCA 748848
>seq299
Length=112621
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 105489 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 105548
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 105549 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 105583
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 107791 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 107850
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||||||||||
Sbjct 107851 GGTAATATTTAGCCTTA 107867
>seq442
Length=86436
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||||||| || ||||| || ||| ||||| || ||||| ||
Sbjct 24989 ACCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCT 25048
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| ||| | || |||||||||||||| ||||| || | || |||||||| | ||
Sbjct 25049 CAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 25108
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| || || ||| || ||| ||||| | | || || || ||
Sbjct 25109 AATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGAC 25168
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||| | ||||| || ||||||||||||||||| ||||| |||||||||
Sbjct 25169 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 25217
>seq296
Length=113092
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||| | || || || || |||||||| || ||| ||| | || ||
Sbjct 112875 ACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTCC 112934
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
||||||||||| || || || | || ||||| || | || | |||||||||||
Sbjct 112935 AATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 112994
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| ||| ||||| | | || ||| |||||||||||||| || |||||
Sbjct 112995 ATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTTTT 113054
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| ||||| || || ||||| || ||||||
Sbjct 113055 CCTGTCAAAGTCTTGACGAAAATTTGCATG 113084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334840961551775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |