Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq343 497 1e-135 seq119 306 5e-78 >seq343 Length=103200 Score = 497 bits (550), Expect = 1e-135 Identities = 1060/1575 (67%), Gaps = 35/1575 (2%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 |||||||| || |||| || |||||||| ||||| || || | |||||||||||||| Sbjct 5041 GCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGTCCCATTTTCCATCCGTAAAAA 5100 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || || ||||| ||| |||| | || || |||| ||| ||||| | || |||||| Sbjct 5101 TGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACATGAATATTAAACGACTGACTT 5160 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 || || || || ||||| | || |||| ||||| || ||||| | ||||||| Sbjct 5161 TGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAATTTGTGTCTTGACGGAAATTTCC 5220 Query 62051 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGG 62105 |||| |||||||| | || ||||| ||||||| |||| || |||| || | Sbjct 5221 CAAACCGTTTTATATATATTTTTTATATCATCTGGAA--TTTGCTCAATAGTCTGTATTG 5278 Query 62106 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62165 | ||| || ||| ||||| | ||||| || || |||| |||||| | || || | Sbjct 5279 AACCATTATTTGCAATAATTTTGTTCTTCATATCGTCATCCCATAAACCACGTTCAGTCA 5338 Query 62166 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 || | | | ||||| ||||||| ||||||||||| ||| | || | ||| | | Sbjct 5339 AATCCTTGATAAGATGGTGATTAACAACTTGAAATTCACCACTGAGAACACGACGATTAT 5398 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 ||| |||||| || || ||||| | ||||||||| |||||||| ||||||||||||| Sbjct 5399 AAACATTACTTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATG 5458 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62345 | |||||||| ||||| | || | ||||| ||||| | || | ||||| |||| Sbjct 5459 CTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTT 5518 Query 62346 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAA 62405 |||||| |||||||| ||| | ||| | || ||||| | Sbjct 5519 TTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATA 5578 Query 62406 TACCGTT--ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 ||| || || || || |||| | || || || |||||||| | || |||| Sbjct 5579 CACCTTTTGAC-ACCGGAC-ATCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAA 5636 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 |||||| || | ||| |||||||| |||||||| ||||| || || | | ||||| || Sbjct 5637 TTCACAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATT 5696 Query 62524 TTGCGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 62580 || |||||| | || ||| |||| | | | |||||| || ||||| ||||| Sbjct 5697 TTTCGCTTC---GTTAGATTCATATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCC 5753 Query 62581 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62640 |||||| ||||| || ||||| | |||||| || || || ||||||| || || Sbjct 5754 TTGAACTCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGG 5813 Query 62641 ATAATAATTAATATCTATAATTTTATTGAGAT---TTCTGACAATTACTTTGACCACATC 62697 ||| ||||| | | ||||||||||| | || || |||| ||| |||| || || Sbjct 5814 ATAGTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATT--TTTG-TAACTTC 5870 Query 62698 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATT-------ACAAACATGTTCAATGCAA 62750 ||||| |||| |||| ||| || | | || ||| |||||||| || || |||| Sbjct 5871 CTTCAATTTGTGAAAGTCATAT-TCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAA 5929 Query 62751 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62810 ||||| | ||||||||| || || |||| | | |||||||| ||| || || | Sbjct 5930 TTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTAC 5989 Query 62811 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 62870 | | ||| ||| || || || | ||| |||||||| || ||| || | || Sbjct 5990 ATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAAT 6049 Query 62871 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 ||||||| || || | || ||||||||||| | |||| || || || || ||| | Sbjct 6050 CCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACA 6109 Query 62931 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 62990 || | ||||||| | | | || || |||| ||| || | ||| | | Sbjct 6110 AATCTTGTGCCTTTACTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTT 6169 Query 62991 GTTCGAACTCGTCTCCCCAAAC-ATT-GTCCAGTCCAGGACATTCATCCGGACACATCAA 63048 | || || ||| || || ||| || || |||| || |||||||| || Sbjct 6170 TCACAAATTC--CTCACCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAA 6227 Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 |||||| | | | | | || || ||| || | ||| |||||||| | || Sbjct 6228 TGACCACATTTCATTGTTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATA 6287 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 ||| | ||||| | ||| ||| || ||||| ||||| || || | ||| || || | Sbjct 6288 AAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTC 6347 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | ||||||| |||||| |||||||| ||||| || | | || || ||||| ||||| Sbjct 6348 AAAAATATCACCATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCC 6407 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 || || || | || | ||||| ||||| || ||||| |||||||||| || ||||| Sbjct 6408 ACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCATT 6467 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 || | ||||| || || | ||||| |||| | || ||||| | || | Sbjct 6468 TGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAAC 6527 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| ||||| ||||| ||| |||||||||||| ||||||| |||||||| || || Sbjct 6528 ACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAAATACC 6587 Query 63409 CTCTATACTATCATC 63423 ||| ||| |||||| Sbjct 6588 CTCAATAGAATCATC 6602 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63796 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 63855 ||| ||||| ||||| ||||| | ||||| ||||| || || || || || | ||| || Sbjct 7124 ATCGTCCATGACTTCGCTAAACTGCTTTTTCGTTTCCTTATGGAGGTTAGAAATGGCAAT 7183 Query 63856 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 63915 || ||| || |||| |||||||| | ||| | || || || ||||| ||||||| Sbjct 7184 TCGAGCAGCGAGAACAGCATAATCTGCATGATCCGTTGTCATCGTTGCTGCAGTTTCGGC 7243 Query 63916 TGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 ||| | | | |||||||| ||||||||||| | |||| ||| | ||| || || Sbjct 7244 TGCTAAATTATCCAATTCCTGTGTTGTTACACCTGTGTATAATCCATTGATTACTTT 7300 >seq119 Length=197918 Score = 306 bits (338), Expect = 5e-78 Identities = 573/833 (69%), Gaps = 13/833 (2%) Strand=Plus/Plus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 |||||||||||| | ||||| |||||||| || | |||||| || || || || || Sbjct 167142 AGACATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCC 167201 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473 || | ||| ||| |||||| || ||||||||| | |||||| | ||| | || Sbjct 167202 CTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAG 167261 Query 32474 TCCCAATTCA-GAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 32532 |||||||||| ||| ||| ||| || ||||||||||| || |||| | |||| Sbjct 167262 TCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATCAC 167320 Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592 ||||||| || | | ||||||||||| || |||| | |||||| | ||||| | Sbjct 167321 AATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTA 167380 Query 32593 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTT 32649 | || ||||| ||||| |||| |||| | | ||||| | | | | ||||| Sbjct 167381 CAGCCTCTGTGATAATTTCAACTACTCTTTCCT---TTGGTGGCTTCTGTTCAAGATGTT 167437 Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 | |||| || ||||| || || | || || || |||||||| ||| | ||| || | Sbjct 167438 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 167497 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 |||| || | || ||||||| || | ||| |||| ||||||||| | ||||| | Sbjct 167498 AAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTAC 167557 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 || ||||||||| ||||| || || ||||| ||||||| || || ||| | || Sbjct 167558 CACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCAT 167617 Query 32830 T-GTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | | || |||||| ||| |||||| || |||||||| || ||||| || | ||||| Sbjct 167618 TCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCT 167677 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || ||||| || | ||| | || |||| ||| ||| || ||||| || | Sbjct 167678 CAATTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATA 167737 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 ||||| ||||| || | ||||| || || ||||| ||||| |||||| ||| || Sbjct 167738 TTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAG 167797 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 | || | || || ||||| || || || || |||||| ||||| || || || | Sbjct 167798 CTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCAT 167857 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGT 33125 || || ||||| || || |||||||| ||||||| | | | | | | || Sbjct 167858 CAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCT-TGAGA 167916 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 || ||||| || | |||||||| |||| ||| ||||| || |||||||| || Sbjct 167917 TTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633425871590000