Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq119 437 1e-117 seq611 114 1e-20 seq607 114 1e-20 seq106 114 1e-20 seq205 95.1 1e-14 >seq119 Length=197918 Score = 437 bits (484), Expect = 1e-117 Identities = 627/877 (71%), Gaps = 15/877 (2%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || |||| ||| || || | || | || | | |||||| |||| Sbjct 167101 TAGAAATCAGCGTCTAATGTGAAAACTTGTTCTTGACGACT---AGACATAACTCCACTC 167157 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| ||||| ||||| ||| ||| ||||| |||||||| || || | || || || Sbjct 167158 TTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATA-AA 167216 Query 92863 TTCACTA---GTGATTGGATTCTTGGCGTTATAATACTTT-TCACCGATCAACTCGTACA 92918 ||| || | || |||||| |||| ||||| ||||| ||| ||| || || Sbjct 167217 TTCCATAAATGAGAATGGATTTTTGGTATTATAG-ACTTTATCAAGTCCCAATTCACCCA 167275 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 |||| |||||| ||||||||||||||||||| ||| |||||||||||||| || | | Sbjct 167276 ATAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACA 167335 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 || || || ||||| || || || || ||||| ||| || || ||| | | | Sbjct 167336 TCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAA 167395 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| | |||||| |||||||| || ||| | | || |||||||||||||| |||| Sbjct 167396 TTTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCAA 167455 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 |||| ||| | |||||||||| || || | ||||| ||||| || ||||| | Sbjct 167456 AGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGCA 167515 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 | ||||| ||||| | ||||||||| | ||||| |||||| ||| || || |||| Sbjct 167516 TTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCTT 167575 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG---ATCC 93275 | || |||||||| || | || ||||| |||| ||||| ||| ||||| |||| Sbjct 167576 CGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGC---ATTCTTGCTGGATATCC 167632 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | ||||||||||| || || || ||||||| ||| || ||||| || || || || |||| Sbjct 167633 AATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATA 167692 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || |||| | | ||||| || || || || ||||| | || ||||| || | Sbjct 167693 AGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCG 167752 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || ||||| ||||| |||||||||||||| ||||| ||| |||||| | | || | Sbjct 167753 AGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAA 167812 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||| ||| || | ||| | | ||| ||||| || || ||||| ||||| ||||| | Sbjct 167813 CTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGA 167872 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575 |||| |||| |||| |||||||| ||| ||| || || || | ||| || | Sbjct 167873 AAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCTTCCA 167932 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 ||||||||| | ||||||||| ||||| ||||| || Sbjct 167933 TATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 >seq611 Length=67363 Score = 114 bits (126), Expect = 1e-20 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 23657 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 23598 Query 126327 GTTCGAACCCCACACCT 126343 ||||||||||||||||| Sbjct 23597 GTTCGAACCCCACACCT 23581 >seq607 Length=67713 Score = 114 bits (126), Expect = 1e-20 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 52406 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCATCTGGGAGCGTGG 52347 Query 126327 GTTCGAACCCCACACCT 126343 ||||||||||||||||| Sbjct 52346 GTTCGAACCCCACACCT 52330 >seq106 Length=206979 Score = 114 bits (126), Expect = 1e-20 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 9791 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCATCTGGGAGCGTGG 9732 Query 126327 GTTCGAACCCCACACCT 126343 ||||||||||||||||| Sbjct 9731 GTTCGAACCCCACACCT 9715 >seq205 Length=143123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/158 (74%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||||||| || | || || ||||||||||| || || ||||| ||||| |||||| Sbjct 86169 ACTTCTTGACTGAACGT-TCAACAAGATTTTCATTAACGATCCCATCAGATGCAGCAAAA 86111 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 ||||| |||| ||| ||||| ||| |||| |||||||| || ||||| | Sbjct 86110 AAAGCTAATACATGAGAGATAAATTGTCGCTCA--GTCTTTAAGTCTAATCCAATAAGTC 86053 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 | ||| ||||| | ||| ||||| || ||||||| ||| Sbjct 86052 ATATCCTTTGATAAATCAACTTCCTCAACAGTCCTAAA 86015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556679646221000