Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq343 161 8e-35 seq296 98.7 8e-16 >seq343 Length=103200 Score = 161 bits (178), Expect = 8e-35 Identities = 927/1466 (63%), Gaps = 47/1466 (3%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || ||||| | |||||| | || || || || || || || || ||||| || Sbjct 5011 TTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCA 5070 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||||| || ||||||| || | ||||| | || || | || ||||| Sbjct 5071 GTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGT 5130 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | | | ||||||||| || |||||||| || ||||| | || |||||||||| | Sbjct 5131 TCAGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGAC 5190 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || ||| | || || |||||||| |||||||| || | | | | | | Sbjct 5191 ATTTGAATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCA 5250 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 | ||| |||| ||||| |||| | || || ||||||||||||||||| ||| Sbjct 5251 TCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCATA 5310 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | | ||| ||| ||||||| | | | | | | || | |||||| Sbjct 5311 TCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTTGA 5370 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || ||||| | ||| || ||| |||| || | ||| | || ||||| ||| Sbjct 5371 AATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAAAGCTCTCA 5430 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTT 129258 || || || || || ||||| |||| || || ||||| || | | || || ||| Sbjct 5431 TTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAATTT 5490 Query 129259 CGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCAC--ATCGATGTGG 129316 || | ||| || |||||| | || ||||| | ||| |||||| |||| |||| Sbjct 5491 CGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCG--GTGG 5548 Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGG 129376 | || | || ||||| || ||||| |||| ||| | |||| | ||| | Sbjct 5549 GAGTCTTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATCCATCGTAAG 5608 Query 129377 AATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 || | || | || ||| ||||| || || | |||||||| ||| |||||| Sbjct 5609 TCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAAA 5668 Query 129437 TTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACG 129494 ||||||| ||| |||| || || || ||| || | || ||| || ||||| | Sbjct 5669 TTGTTTC--AAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATATGGCATTCT 5726 Query 129495 CAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCT 129554 || || ||| | || ||||| ||||||| || | || || || |||||| | Sbjct 5727 CATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAA 5786 Query 129555 ATTGGA--TTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAA 129612 || || ||| | | |||| ||||||||| || | || |||||||| || ||| Sbjct 5787 GTTTGACCGTTTAGCTTCTTCAAC--GGGATAGTAATTTACGTTAATAATTTTATTCAAA 5844 Query 129613 TTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCG 129672 ||| | || ||||| || || | || || | | ||| | || || | | || Sbjct 5845 TTCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTT 5904 Query 129673 ATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTG 129732 | |||||| ||| | | ||| || || ||||| || || ||| ||| | || Sbjct 5905 TGTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTT- 5963 Query 129733 TCACT---GTACTCGACAATTTCGGCGCACAAATT---ACTATTTTTAATGGTGCCCAAA 129786 ||| || | || ||||| | || ||||| || | | || || || | | Sbjct 5964 --ACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGT---ATTGTCCCAAGA 6018 Query 129787 TGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTT 129846 | || |||||| |||| |||||| | ||| || |||| ||| || || || || ||| Sbjct 6019 TTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTT 6078 Query 129847 TCGACTTGCGTTTCGACAATGGTCCTGA---ACAAGTCTCGAGCCTTGATCTGTCTTACA 129903 || ||||| | | ||||| | || |||| ||| | ||||| | || | || Sbjct 6079 TCTACTTGAG---CCTCAATGATTGCGAACCACAAATCTTGTGCCTTTA-CT---TGACG 6131 Query 129904 AATTTGCCACATTTC----TCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTAC 129959 ||| | || ||| || || | |||| |||| ||||||| || |||| Sbjct 6132 AATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACC--GTAC 6189 Query 129960 GGTGTCGAGCA-ACGGCGATT--CACGCGGACACATCAAACTCCACATTCCATCCGCTTC 130016 | | || | | || | || | | |||||||| || ||||||| ||| ||| Sbjct 6190 GAT-TCAAAAAGACCGGGACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTC 6248 Query 130017 GACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCT 130076 || || ||| |||||||| || | ||||| || || |||| |||| ||| | Sbjct 6249 AACCCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGAC 6308 Query 130077 ATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGG 130136 || || || | || || | || || || || |||| || | ||||| || Sbjct 6309 TTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGG 6368 Query 130137 TTCAACATAAATTGCCATTGCGCCCTTCCGT---TTGCCCCCTTGGTCAACGTGGCGCAC 130193 ||| | ||| ||||| | ||||| ||| || || ||||||||||| | || | Sbjct 6369 TTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGC 6428 Query 130194 GGCATTGTTGTAGACTCGCAACATTG 130219 || ||| ||||| |||| ||||||| Sbjct 6429 GGTATTATTGTATACTCTTAACATTG 6454 >seq296 Length=113092 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||||| || || ||||| |||| | ||||| || | | Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATCA 113024 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| || |||||||| || || |||||||| || ||| Sbjct 113023 GACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 112964 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || || ||| || || | ||| ||||| Sbjct 112963 CAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAAT 112904 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || | ||||| ||| | || | || ||||| Sbjct 112903 ATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG 112857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419594870804125