Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq442 170 4e-37 seq296 170 4e-37 seq10680 96.9 6e-15 seq17255 87.8 3e-12 >seq442 Length=86436 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||||||||| || ||||| || || ||||||||||||||||| || ||| Sbjct 24990 CCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTC 25049 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||||||||| || || || || || || | | ||||| || |||||| Sbjct 25050 AATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 25109 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||||||||| |||||||| || || ||||| | || || ||| Sbjct 25110 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACT 25169 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || ||||| | ||| |||||||| |||||||| Sbjct 25170 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 >seq296 Length=113092 Score = 170 bits (188), Expect = 4e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||||||||| ||||| || | ||||| || | || || ||||| ||||| || || Sbjct 112850 TTAATTTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTA 112909 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| | ||| | |||||||| || || || || ||||| || | | |||||||| Sbjct 112910 GTCGCTCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTC 112969 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 |||||||| ||||| |||||||| ||||||||||| || || || ||||||| || Sbjct 112970 TGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGG 113029 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || |||||||||||||| || | ||||||||||| || ||||| Sbjct 113030 CTCAACTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq10680 Length=1285 Score = 96.9 bits (106), Expect = 6e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| ||||| || ||||| || || ||||| || ||||| ||||| | | Sbjct 1285 TCTGGTGGAATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCAGAT 1226 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| |||||||| |||||||| ||||| || | ||||||||||| || ||||| Sbjct 1225 GGTTCGACTTCCAATGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 1170 >seq17255 Length=1118 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 |||||||| |||||||| |||||||| ||||| || || ||||| || || || || Sbjct 13 TGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTA 72 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || ||||||||||| || ||||| || || | || || ||||| || ||| Sbjct 73 TCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACGAAAATTTGC 132 Query 68460 ATTATG 68465 ||| || Sbjct 133 ATTCTG 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921322584713000