Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq296 138 3e-27
seq442 132 1e-25
seq10 131 4e-25
seq10680 87.8 4e-12
seq119 87.8 4e-12
seq782 84.2 5e-11
>seq296
Length=113092
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302
|| ||| || || || | ||| || | ||| | || |||||| |||||||| |||||
Sbjct 112853 ATTTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTC 112912
Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362
| | || || || ||||| |||||||||||||||||||||| |||||||||
Sbjct 112913 GCTCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGG 112972
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||| ||||||||||| || ||||| || || || || ||||| || | || | ||
Sbjct 112973 TGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTC 113032
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| || || || |||| |||||||||||| || |||||
Sbjct 113033 AACTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083
>seq442
Length=86436
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||||||||| || |||||| | || || || ||||||||||||||||| || |||
Sbjct 25026 TCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 25085
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| |||||||||| ||| |||||||| ||||| || || || || || || |||
Sbjct 25086 ATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTT 25145
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | || |||||||| || || ||||| || |||| || ||||||
Sbjct 25146 TCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACG 25205
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 25206 AAGATCTGCAT 25216
>seq10
Length=552578
Score = 131 bits (144), Expect = 4e-25
Identities = 264/389 (68%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 72409 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 72468
|| ||| || || ||| | ||||| |||||||||||||| |||| ||| || || |
Sbjct 300325 GATTTTATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTG 300384
Query 72469 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 72528
| || || || || ||||| |||| || || | || || || | || | || ||||
Sbjct 300385 AGAAGACACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGA 300444
Query 72529 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 72588
|| || |||||||||||| | || ||||||| ||| || |||| || ||||
Sbjct 300445 TCATTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATC 300504
Query 72589 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 72648
| || || | ||||| | | ||||| || | ||||| || ||||| |
Sbjct 300505 ATGAATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTA 300564
Query 72649 ATATTTTCAATGGTG-TCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGAT 72707
| | ||||| | | || ||| | || | || |||||| | || | ||| | |||
Sbjct 300565 A-AATTTCATTAAAGCAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGAT 300623
Query 72708 TGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCG 72767
||||| |||| ||||| ||||| ||||| |||||| ||||| ||||||| ||| ||
Sbjct 300624 TGGGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCA 300683
Query 72768 GATGACTATGTGATTGCAACAGGGAAAAC 72796
|| || | ||| ||||| ||||| ||||
Sbjct 300684 GAAGATTTTGTAATTGCTACAGGCGAAAC 300712
>seq10680
Length=1285
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||| |||||||||||||| |||||||| || || || ||||| || | || | |||
Sbjct 1280 TGGAATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCAGATGGTTC 1221
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| ||||| || |||| |||||||||||| || |||||
Sbjct 1220 GACTTCCAATGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 1170
>seq119
Length=197918
Score = 87.8 bits (96), Expect = 4e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 269149 ATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATC 269208
||| | || |||||| ||| | |||| ||| || || ||||| || ||||||| | |
Sbjct 167336 ATGTTGGGCATGAATTGTGATTTAATGACTCAGTACATAGAATTTGTTGCTGATCATTTA 167277
Query 269209 TTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAA 269268
|| | | | || ||| ||||| || ||| | || ||||| ||| | |||||||||
Sbjct 167276 TTGGGTGAATTGGGACTTGATAAAGTCTATAATACCAAAAATCCATTCTCATTTATGGAA 167217
Query 269269 CTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAA 269304
| ||||| || || || ||||| ||||||||||||
Sbjct 167216 TTTATTTCACTTGAGGGCAAGACAAACTTCTTCGAA 167181
>seq782
Length=54866
Score = 84.2 bits (92), Expect = 5e-11
Identities = 188/278 (68%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381
||||| || | ||| || ||| || || ||| || | || ||| ||||| || |
Sbjct 42764 ATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTA 42705
Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441
|| | | | || || || || ||||||||||||| || || | || || || ||
Sbjct 42704 GGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGTA 42645
Query 325442 CCTTGCAGAG--ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGA 325499
| |||| || | |||| ||||| ||||| || || || || |||||| |||| |
Sbjct 42644 C--TGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCA 42587
Query 325500 ACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTC 325558
|||| ||||| || || || | | ||| || || ||||| || | | || | |||
Sbjct 42586 ACTGAGCAACTTTAACCTCCTTTTTGTCATTACGTTT-AAAGCATGTAAAAATGATTTTA 42528
Query 325559 CGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596
|||||| ||| || ||||||||||| || | |||||
Sbjct 42527 CGTTGACCAGGCTTAAAACCATCAACAACACATGGAAT 42490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179261049769950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |