Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq296 138 3e-27 seq442 132 1e-25 seq10 131 4e-25 seq10680 87.8 4e-12 seq119 87.8 4e-12 seq782 84.2 5e-11 >seq296 Length=113092 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || || || | ||| || | ||| | || |||||| |||||||| ||||| Sbjct 112853 ATTTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTC 112912 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | | || || || ||||| |||||||||||||||||||||| ||||||||| Sbjct 112913 GCTCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGG 112972 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||||||||| || ||||| || || || || ||||| || | || | || Sbjct 112973 TGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTC 113032 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || || |||| |||||||||||| || ||||| Sbjct 113033 AACTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq442 Length=86436 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || |||||| | || || || ||||||||||||||||| || ||| Sbjct 25026 TCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 25085 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||||||| ||| |||||||| ||||| || || || || || || ||| Sbjct 25086 ATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTT 25145 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || |||||||| || || ||||| || |||| || |||||| Sbjct 25146 TCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACG 25205 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 25206 AAGATCTGCAT 25216 >seq10 Length=552578 Score = 131 bits (144), Expect = 4e-25 Identities = 264/389 (68%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 72409 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 72468 || ||| || || ||| | ||||| |||||||||||||| |||| ||| || || | Sbjct 300325 GATTTTATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTG 300384 Query 72469 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 72528 | || || || || ||||| |||| || || | || || || | || | || |||| Sbjct 300385 AGAAGACACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGA 300444 Query 72529 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 72588 || || |||||||||||| | || ||||||| ||| || |||| || |||| Sbjct 300445 TCATTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATC 300504 Query 72589 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 72648 | || || | ||||| | | ||||| || | ||||| || ||||| | Sbjct 300505 ATGAATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTA 300564 Query 72649 ATATTTTCAATGGTG-TCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGAT 72707 | | ||||| | | || ||| | || | || |||||| | || | ||| | ||| Sbjct 300565 A-AATTTCATTAAAGCAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGAT 300623 Query 72708 TGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCG 72767 ||||| |||| ||||| ||||| ||||| |||||| ||||| ||||||| ||| || Sbjct 300624 TGGGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCA 300683 Query 72768 GATGACTATGTGATTGCAACAGGGAAAAC 72796 || || | ||| ||||| ||||| |||| Sbjct 300684 GAAGATTTTGTAATTGCTACAGGCGAAAC 300712 >seq10680 Length=1285 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| |||||||||||||| |||||||| || || || ||||| || | || | ||| Sbjct 1280 TGGAATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCAGATGGTTC 1221 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| |||||||||||| || ||||| Sbjct 1220 GACTTCCAATGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 1170 >seq119 Length=197918 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 269149 ATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATC 269208 ||| | || |||||| ||| | |||| ||| || || ||||| || ||||||| | | Sbjct 167336 ATGTTGGGCATGAATTGTGATTTAATGACTCAGTACATAGAATTTGTTGCTGATCATTTA 167277 Query 269209 TTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAA 269268 || | | | || ||| ||||| || ||| | || ||||| ||| | ||||||||| Sbjct 167276 TTGGGTGAATTGGGACTTGATAAAGTCTATAATACCAAAAATCCATTCTCATTTATGGAA 167217 Query 269269 CTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAA 269304 | ||||| || || || ||||| |||||||||||| Sbjct 167216 TTTATTTCACTTGAGGGCAAGACAAACTTCTTCGAA 167181 >seq782 Length=54866 Score = 84.2 bits (92), Expect = 5e-11 Identities = 188/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 ||||| || | ||| || ||| || || ||| || | || ||| ||||| || | Sbjct 42764 ATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTA 42705 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 || | | | || || || || ||||||||||||| || || | || || || || Sbjct 42704 GGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGTA 42645 Query 325442 CCTTGCAGAG--ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGA 325499 | |||| || | |||| ||||| ||||| || || || || |||||| |||| | Sbjct 42644 C--TGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCA 42587 Query 325500 ACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTC 325558 |||| ||||| || || || | | ||| || || ||||| || | | || | ||| Sbjct 42586 ACTGAGCAACTTTAACCTCCTTTTTGTCATTACGTTT-AAAGCATGTAAAAATGATTTTA 42528 Query 325559 CGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 325596 |||||| ||| || ||||||||||| || | ||||| Sbjct 42527 CGTTGACCAGGCTTAAAACCATCAACAACACATGGAAT 42490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179261049769950