Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq10 131 4e-25 seq782 107 4e-18 >seq10 Length=552578 Score = 131 bits (144), Expect = 4e-25 Identities = 264/389 (68%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 68398 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 68457 || ||| || || ||| | ||||| |||||||||||||| |||| ||| || || | Sbjct 300325 GATTTTATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTG 300384 Query 68458 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 68517 | || || || || ||||| |||| || || | || || || | || | || |||| Sbjct 300385 AGAAGACACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGA 300444 Query 68518 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 68577 || || |||||||||||| | || ||||||| ||| || |||| || |||| Sbjct 300445 TCATTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATC 300504 Query 68578 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 68637 | || || | ||||| | | ||||| || | ||||| || ||||| | Sbjct 300505 ATGAATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTA 300564 Query 68638 ATATTTTCAATGGTG-TCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGAT 68696 | | ||||| | | || ||| | || | || |||||| | || | ||| | ||| Sbjct 300565 A-AATTTCATTAAAGCAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGAT 300623 Query 68697 TGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCG 68756 ||||| |||| ||||| ||||| ||||| |||||| ||||| ||||||| ||| || Sbjct 300624 TGGGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCA 300683 Query 68757 GATGACTATGTGATTGCAACAGGGAAAAC 68785 || || | ||| ||||| ||||| |||| Sbjct 300684 GAAGATTTTGTAATTGCTACAGGCGAAAC 300712 >seq782 Length=54866 Score = 107 bits (118), Expect = 4e-18 Identities = 338/514 (66%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 297209 TCTTCTCCAGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGG 297268 ||||||||| |||| | |||| ||| | | || || |||||| | || || Sbjct 42998 TCTTCTCCATTCATCATGCTTTTCAAGTTCTTAATAATTTCACGTGGATTATGACATGGA 42939 Query 297269 ATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATA 297328 || || || ||||| || ||||| || || | ||||| || |||| | |||||| Sbjct 42938 ATTTTTGTTGACCATCCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGAATA 42879 Query 297329 ACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGA 297388 | || |||||||| || || || || | | ||| |||| || | | || || | | Sbjct 42878 ATTGGAACATAATATTCAGGCTCAATACGCTGATTGTCTTCATCCAAAAAGTTAAGCAAA 42819 Query 297389 TTATCGTCCGTATCGACGAAA-ACCTGTCGAGTCTGAGGGTTCA-GTTTTGTGAAAATAT 297446 ||| || | | || | || | || |||| || | || | | | |||||||||| Sbjct 42818 GGATCATCA-TGTGGATGGAAGATGTGACGAG-CTAATGGCGAAAGCATCGTGAAAATAT 42761 Query 297447 ATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCA 297506 | || | ||| || ||| || || ||| || | || ||| ||||| || | || Sbjct 42760 AACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTAGGTT 42701 Query 297507 ACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTT 297566 | | | || || || || ||||||||||||| || || | || || || || | | Sbjct 42700 GAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGTAC--T 42643 Query 297567 GCAGAG--ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTG 297624 ||| || | |||| ||||| ||||| || || || || |||||| |||| ||||| Sbjct 42642 GCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCAACTG 42583 Query 297625 TGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTCCGTT 297683 ||||| || || || | | ||| || || ||||| || | | || | ||| |||| Sbjct 42582 AGCAACTTTAACCTCCTTTTTGTCATTACGTTT-AAAGCATGTAAAAATGATTTTACGTT 42524 Query 297684 GAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 || ||| || ||||||||||| || | ||||| Sbjct 42523 GACCAGGCTTAAAACCATCAACAACACATGGAAT 42490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102512249833750