Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq343 185 9e-42 seq296 100 3e-16 seq10680 82.4 8e-11 seq442 82.4 8e-11 >seq343 Length=103200 Score = 185 bits (204), Expect = 9e-42 Identities = 911/1450 (63%), Gaps = 17/1450 (1%) Strand=Plus/Plus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 |||||| || ||||| || |||| || || ||||| ||||| || |||||||| || Sbjct 5010 TTTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCC 5069 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 ||||||| || |||||| || | || | | |||||| | | || |||| Sbjct 5070 AGTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGG 5129 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 | |||| | | ||||||||||| || || || || ||||| || |||||||| | Sbjct 5130 TTCAGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGA 5189 Query 153851 CATGTCAATCAA-GTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909 ||| | ||| || || || | |||||||| || ||||| || | ||| || | Sbjct 5190 CATTTGAATTTGTGTCTTGACGGAA-ATTTCCCAAACCGTTTTATATATATTTTTTATAT 5248 Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCA 153969 | || || || | ||||| |||| | || || ||||| || || Sbjct 5249 CATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCA 5308 Query 153970 TGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTT 154029 | | ||| || | ||| || | ||||| | | | || || |||| |||| Sbjct 5309 TATCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTT 5368 Query 154030 GAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATT 154089 |||| || || | || || || ||| | ||| || ||| | || || || | Sbjct 5369 GAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAAAGCTCT 5428 Query 154090 CGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGT 154149 | || || || || || ||||| || | |||||| ||||| || | || | || | Sbjct 5429 CATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAAT 5488 Query 154150 TTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAG 154209 |||| | ||| ||| ||| ||||| | || |||||| |||||| | ||| | Sbjct 5489 TTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTGG 5548 Query 154210 GTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAAC 154269 | | | |||||| || ||||| || ||||| | |||||| || ||| Sbjct 5549 GAGTCTTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATCCATCGTAAG 5608 Query 154270 TAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATA 154329 | || || || ||| ||| || || || |||| || || || |||| || | Sbjct 5609 TCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAAA 5668 Query 154330 CGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCA 154389 ||||| ||||||| ||||| |||| |||| || | ||| || |||| || || Sbjct 5669 TTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATATGGCATTCTCA 5728 Query 154390 ATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAAT 154449 | | ||||||||| || | ||||||| || | ||||| || | ||| | || | Sbjct 5729 TCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAAGT 5788 Query 154450 TCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANNNNNN 154509 | || ||| || | || | ||||| ||||| | | ||||||||||| | Sbjct 5789 TTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAATTCC 5848 Query 154510 NNNNNNNNNNNNNNNnnnnnnnnNNNNATGCGACAAAATCAAACACTC--CGCTTTTAAT 154567 || | ||| ||| | ||| || |||| | Sbjct 5849 TTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTTGTT 5908 Query 154568 A---AAACG-ATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTAC 154623 |||| ||||| | | || || || || ||||| |||| ||| || ||| Sbjct 5909 TGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTG 5968 Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 ||||| || ||||| | || ||||| || || || || || || || | |||| Sbjct 5969 AATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGAT 6028 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | ||||| |||||||| || || |||| || || || || || ||||| ||||| | Sbjct 6029 TTGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAG 6088 Query 154744 TTTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTC 154801 ||||| |||| |||| || | || | |||| ||||||| | || | | ||| Sbjct 6089 CCTCAATGATTG--CGAACCACAAATCTTGTGCCTTTACTTGACGAATATACCTTCCTTC 6146 Query 154802 -GCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGG 154860 ||| ||||| ||| || ||||| |||| || || |||| || | | ||||| Sbjct 6147 TGCT-TCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGATTCAAAAAGACCGG 6205 Query 154861 GACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACA 154920 ||| | | |||||||| |||||||||||||| || | || || || ||| |||| Sbjct 6206 GACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGACGCATGAACA 6265 Query 154921 AATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGT 154980 |||| || | |||||| || || |||| || | || | ||||| || | | Sbjct 6266 AATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGTAT 6325 Query 154981 TTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCA 155040 || |||||||| || ||| ||| | || || | ||||| || || ||||||| || | Sbjct 6326 TTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATATATTGCAA 6385 Query 155041 TCGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGC 155097 ||||||| ||| ||||| ||||| || || | ||| | ||||||||| || | Sbjct 6386 ACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATACTC 6445 Query 155098 GCAACAATGG 155107 |||| ||| Sbjct 6446 TTAACATTGG 6455 >seq296 Length=113092 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || |||||||| || || ||||| || | || || | || Sbjct 112871 AAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATC 112930 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | ||||| ||||| || |||||||||||||| || Sbjct 112931 TTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTC 112990 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||||||| || | ||| || | || ||||||| || | ||| Sbjct 112991 TTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGT 113050 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || |||||||||||||| Sbjct 113051 TTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq10680 Length=1285 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64328 TCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCG 64387 || || |||||||||||||| ||||| ||||| ||| ||| || | ||| ||| Sbjct 1285 TCTGGTGGAATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCAGAT 1226 Query 64388 GCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 | || ||||| | || | |||||| || |||||||| || ||||| |||||||| || Sbjct 1225 GGTTCGACTTCCAATGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATGCTA 1166 Query 64448 ATAATGATACACTTAATT 64465 | || || | | |||||| Sbjct 1165 AAAACGAAATAATTAATT 1148 >seq442 Length=86436 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| |||| || || |||||||| |||||||| || | || || | ||||| Sbjct 25007 CACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCTTC 25066 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || || ||| | || | ||||| || || || ||||||||||| || ||||| Sbjct 25067 TAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCTTG 25126 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || ||| | || ||||| | || | ||||| Sbjct 25127 AATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTCTT 25186 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| ||||| || ||||| Sbjct 25187 ACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499482259301000