Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq343 163 3e-35
seq296 125 6e-24
seq442 122 8e-23
>seq343
Length=103200
Score = 163 bits (180), Expect = 3e-35
Identities = 919/1451 (63%), Gaps = 39/1451 (3%)
Strand=Plus/Minus
Query 123244 GAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA---ACGCAAAGGCGCGA 123300
|||| |||||||| ||| || | || ||||| || || || ||| |||||||
Sbjct 6445 GAGTATACAATAATACCGCACGTTATGTTGACCAAGGTGGAAATAAACGTCCAGGCGCGT 6386
Query 123301 TGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCA 123360
| || || ||| | ||||| ||||| | |||| | | || ||| | ||||||| |
Sbjct 6385 TTGCAATATATTTGGAACCTTGGCATGGTGATATTTTTGAATTTCTGGATTTAAAGAAAA 6326
Query 123361 ACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATT 123420
| | || |||||| | ||| | || |||| || || || ||| | || ||||
Sbjct 6325 ATACTGGAAAAGAAGAAGTCAGAGCTAGAGACATGTTTTATGCATTGTGGATTCCAGATT 6266
Query 123421 TGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTC 123480
|||| ||||| || || || || | | ||||||| | |||||||| || | |||
Sbjct 6265 TGTTCATGCGTCGGGTTGAAAACAATGAAATGTGGTCATTAATGTGTCCTAATAGTAGTC 6206
Query 123481 CCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCG 123540
|||| | || ||||| | | |||| | | || | || || |
Sbjct 6205 CCGGTCTTTTTGAATCGTACGGTGAGGAATTTGTGAAACTTTATGAAGGCTATGAAGCAG 6146
Query 123541 AAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGT---TCAAATTTATTATCGAAA 123597
|||| | | || |||| || ||||| ||||||| || | | ||| ||
Sbjct 6145 AAGGAAGGTATATTCGTCAAGTAAAGGCACAAGATTTGTGGTTCGCAATCATT---GAGG 6089
Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657
| ||||| ||||| || || || || ||||| || || || | |||||| ||||| | |
Sbjct 6088 CTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAACCGGAAATCAA 6029
Query 123658 ATCAG-AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA- 123715
|||| || | ||||||| ||||| ||| ||| | || | ||||| | ||||
Sbjct 6028 ATCAACAGAATCTTGGGA-CAATACGTTGTTCGAATTTATGTACGGAAATAGTACAATAT 5970
Query 123716 -CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCG 123774
|| | | ||| |||| || || |||||||| || || ||| | ||| | |
Sbjct 5969 TCAAGTAAG--GATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTTAAATATGTTTG 5912
Query 123775 TCGAAAA----CGGCGC---TTTTAATTTC-CAAACGCTCAAACGCA-TAACAAAAACTG 123825
|| || | || | | | | |||| |||| | || | | | ||||||| |
Sbjct 5911 TCAAACAAAATCGAAGAGAATATGACTTTCACAAA---TTGAAGGAAGTTACAAAAATAG 5855
Query 123826 TAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTT 123885
| || ||||||||| |||||||| | || |||| ||||| | || |||||
Sbjct 5854 TCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAAGCTAAAC 5795
Query 123886 TGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTG 123945
||| || || | ||| | || | ||| | || ||||||| ||||| || || |||
Sbjct 5794 GGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGATGCTTTTA 5735
Query 123946 TAATGCTGCGCATGCCGTACGAAAGCGACGAAGC--AAAGTTGCTTAATACGCAAATAGC 124003
| || || | ||||| || ||| ||||||| ||| || | ||| ||||||
Sbjct 5734 TTTTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATT--TAAATCAACAAATATT 5677
Query 124004 CGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAA-AATTCACGGC 124061
|||||||||||||| || || |||||| | ||||| ||| | || ||| |||| ||
Sbjct 5676 TGAAACAATTTATTATGGTGCATTGGAGTCCAGCTGTGAATTAGCAGAACAATT--GGGA 5619
Query 124062 GCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121
| || || | ||||| || | |||| | |||| | || || || || ||||||
Sbjct 5618 CCATATGAGACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATATGTGG 5559
Query 124122 AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCAC 124181
|| || || || |||||||||| ||| | | ||||| || || | |
Sbjct 5558 GATAAGACTCCCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAATTAAAAAGTTT 5499
Query 124182 GGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTA 124241
||| | || || || || || | || |||||||| ||| | |||||||| |||||
Sbjct 5498 GGTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGATTTTG 5439
Query 124242 GGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCC 124301
|| || || || ||| || || | ||| | ||| | || || || || |
Sbjct 5438 GGTAATAATGAGAGCTTTGAACCTTACACAAGTAATGTTTATAATCGTCGTGTTCTCAGT 5379
Query 124302 GGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTG-GTG-GCGTTAAATTTGT 124359
|| || |||||||| | ||||| ||| | | | || ||| || ||| ||| |
Sbjct 5378 GGTGAATTTCAAGTTGTTAATCACCATCTTATCAAGGATTTGACTGAACGT--GGTTTAT 5321
Query 124360 ACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTT 124419
||||| | ||| ||| |||||||||| ||| | ||| || |
Sbjct 5320 GGGATGACGATATGAAGAACAAAATTATTGCAAATAATGGTTCAATACAGACTATTGAGC 5261
Query 124420 CGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGAT 124479
||||| || | | || | | || ||||| || |||||||| || |
Sbjct 5260 AAATTCCAGATGATATAAAAAATATATATAAAACGGTTTGGGAAATTTCCGTCAAGACAC 5201
Query 124480 TAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGT 124539
|||| ||||| | | ||| || || || | | || |||||||| || ||||| |
Sbjct 5200 AAATTCAAATGTCTGCCGATCGTGGAGCTTTTATAGACCAAAGTCAGTCGTTTAATATTC 5141
Query 124540 TTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCG 124599
|||||| ||||||| || | | || ||| || | ||| |||| | |
Sbjct 5140 ATGTAGCTGAACCCAATTATGGGAAATTAACGTCCATTCATTTTTACGGATGGAAAATGG 5081
Query 124600 GACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTA 124659
|||| ||||| || |||||||||||| |||| ||||| || || |||| ||||| ||||
Sbjct 5080 GACTGAAAACTGGAATGTATTACTTACGAACAAAACCCGCTGCAAATGCTATTCAGTTTA 5021
Query 124660 CCGTCGACAAA 124670
| || ||||||
Sbjct 5020 CTGTTGACAAA 5010
>seq296
Length=113092
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171
||||||| || || | | || | ||||| || ||||| || |||||||| || ||||
Sbjct 112855 TTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGC 112914
Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
| | || | ||| |||||||||||||||||| | ||||| || || ||||| || |
Sbjct 112915 TCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTG 112974
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
|||| |||||||| ||||| || ||| || | ||| | ||||| || | ||| |
Sbjct 112975 GAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAA 113034
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| | || | ||||| || || | ||| || || |||||||||||
Sbjct 113035 CTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083
>seq442
Length=86436
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | |||||||| || || ||||| || |||||||| || || |||||
Sbjct 24990 CCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTC 25049
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | ||| || ||||||||||| || | ||||| || || || || || |||
Sbjct 25050 AATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 25109
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||| ||||||||||| || |||| ||| | ||||| || | |||||||
Sbjct 25110 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACT 25169
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| |||| || || || || | ||||| || || || |||||
Sbjct 25170 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451856157709000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |