Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq343 163 3e-35 seq296 125 6e-24 seq442 122 8e-23 >seq343 Length=103200 Score = 163 bits (180), Expect = 3e-35 Identities = 919/1451 (63%), Gaps = 39/1451 (3%) Strand=Plus/Minus Query 123244 GAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA---ACGCAAAGGCGCGA 123300 |||| |||||||| ||| || | || ||||| || || || ||| ||||||| Sbjct 6445 GAGTATACAATAATACCGCACGTTATGTTGACCAAGGTGGAAATAAACGTCCAGGCGCGT 6386 Query 123301 TGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCA 123360 | || || ||| | ||||| ||||| | |||| | | || ||| | ||||||| | Sbjct 6385 TTGCAATATATTTGGAACCTTGGCATGGTGATATTTTTGAATTTCTGGATTTAAAGAAAA 6326 Query 123361 ACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATT 123420 | | || |||||| | ||| | || |||| || || || ||| | || |||| Sbjct 6325 ATACTGGAAAAGAAGAAGTCAGAGCTAGAGACATGTTTTATGCATTGTGGATTCCAGATT 6266 Query 123421 TGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTC 123480 |||| ||||| || || || || | | ||||||| | |||||||| || | ||| Sbjct 6265 TGTTCATGCGTCGGGTTGAAAACAATGAAATGTGGTCATTAATGTGTCCTAATAGTAGTC 6206 Query 123481 CCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCG 123540 |||| | || ||||| | | |||| | | || | || || | Sbjct 6205 CCGGTCTTTTTGAATCGTACGGTGAGGAATTTGTGAAACTTTATGAAGGCTATGAAGCAG 6146 Query 123541 AAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGT---TCAAATTTATTATCGAAA 123597 |||| | | || |||| || ||||| ||||||| || | | ||| || Sbjct 6145 AAGGAAGGTATATTCGTCAAGTAAAGGCACAAGATTTGTGGTTCGCAATCATT---GAGG 6089 Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 | ||||| ||||| || || || || ||||| || || || | |||||| ||||| | | Sbjct 6088 CTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAACCGGAAATCAA 6029 Query 123658 ATCAG-AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA- 123715 |||| || | ||||||| ||||| ||| ||| | || | ||||| | |||| Sbjct 6028 ATCAACAGAATCTTGGGA-CAATACGTTGTTCGAATTTATGTACGGAAATAGTACAATAT 5970 Query 123716 -CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCG 123774 || | | ||| |||| || || |||||||| || || ||| | ||| | | Sbjct 5969 TCAAGTAAG--GATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTTAAATATGTTTG 5912 Query 123775 TCGAAAA----CGGCGC---TTTTAATTTC-CAAACGCTCAAACGCA-TAACAAAAACTG 123825 || || | || | | | | |||| |||| | || | | | ||||||| | Sbjct 5911 TCAAACAAAATCGAAGAGAATATGACTTTCACAAA---TTGAAGGAAGTTACAAAAATAG 5855 Query 123826 TAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTT 123885 | || ||||||||| |||||||| | || |||| ||||| | || ||||| Sbjct 5854 TCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAAGCTAAAC 5795 Query 123886 TGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTG 123945 ||| || || | ||| | || | ||| | || ||||||| ||||| || || ||| Sbjct 5794 GGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGATGCTTTTA 5735 Query 123946 TAATGCTGCGCATGCCGTACGAAAGCGACGAAGC--AAAGTTGCTTAATACGCAAATAGC 124003 | || || | ||||| || ||| ||||||| ||| || | ||| |||||| Sbjct 5734 TTTTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATT--TAAATCAACAAATATT 5677 Query 124004 CGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAA-AATTCACGGC 124061 |||||||||||||| || || |||||| | ||||| ||| | || ||| |||| || Sbjct 5676 TGAAACAATTTATTATGGTGCATTGGAGTCCAGCTGTGAATTAGCAGAACAATT--GGGA 5619 Query 124062 GCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121 | || || | ||||| || | |||| | |||| | || || || || |||||| Sbjct 5618 CCATATGAGACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATATGTGG 5559 Query 124122 AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCAC 124181 || || || || |||||||||| ||| | | ||||| || || | | Sbjct 5558 GATAAGACTCCCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAATTAAAAAGTTT 5499 Query 124182 GGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTA 124241 ||| | || || || || || | || |||||||| ||| | |||||||| ||||| Sbjct 5498 GGTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGATTTTG 5439 Query 124242 GGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCC 124301 || || || || ||| || || | ||| | ||| | || || || || | Sbjct 5438 GGTAATAATGAGAGCTTTGAACCTTACACAAGTAATGTTTATAATCGTCGTGTTCTCAGT 5379 Query 124302 GGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTG-GTG-GCGTTAAATTTGT 124359 || || |||||||| | ||||| ||| | | | || ||| || ||| ||| | Sbjct 5378 GGTGAATTTCAAGTTGTTAATCACCATCTTATCAAGGATTTGACTGAACGT--GGTTTAT 5321 Query 124360 ACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTT 124419 ||||| | ||| ||| |||||||||| ||| | ||| || | Sbjct 5320 GGGATGACGATATGAAGAACAAAATTATTGCAAATAATGGTTCAATACAGACTATTGAGC 5261 Query 124420 CGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGAT 124479 ||||| || | | || | | || ||||| || |||||||| || | Sbjct 5260 AAATTCCAGATGATATAAAAAATATATATAAAACGGTTTGGGAAATTTCCGTCAAGACAC 5201 Query 124480 TAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGT 124539 |||| ||||| | | ||| || || || | | || |||||||| || ||||| | Sbjct 5200 AAATTCAAATGTCTGCCGATCGTGGAGCTTTTATAGACCAAAGTCAGTCGTTTAATATTC 5141 Query 124540 TTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCG 124599 |||||| ||||||| || | | || ||| || | ||| |||| | | Sbjct 5140 ATGTAGCTGAACCCAATTATGGGAAATTAACGTCCATTCATTTTTACGGATGGAAAATGG 5081 Query 124600 GACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTA 124659 |||| ||||| || |||||||||||| |||| ||||| || || |||| ||||| |||| Sbjct 5080 GACTGAAAACTGGAATGTATTACTTACGAACAAAACCCGCTGCAAATGCTATTCAGTTTA 5021 Query 124660 CCGTCGACAAA 124670 | || |||||| Sbjct 5020 CTGTTGACAAA 5010 >seq296 Length=113092 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| || || | | || | ||||| || ||||| || |||||||| || |||| Sbjct 112855 TTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGC 112914 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || | ||| |||||||||||||||||| | ||||| || || ||||| || | Sbjct 112915 TCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTG 112974 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| |||||||| ||||| || ||| || | ||| | ||||| || | ||| | Sbjct 112975 GAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAA 113034 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | || | ||||| || || | ||| || || ||||||||||| Sbjct 113035 CTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq442 Length=86436 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | |||||||| || || ||||| || |||||||| || || ||||| Sbjct 24990 CCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTC 25049 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || ||||||||||| || | ||||| || || || || || ||| Sbjct 25050 AATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGA 25109 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| ||||||||||| || |||| ||| | ||||| || | ||||||| Sbjct 25110 ATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACT 25169 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| || || || || | ||||| || || || ||||| Sbjct 25170 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451856157709000