Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq119 149 6e-31
seq296 111 2e-19
seq442 86.0 6e-12
>seq119
Length=197918
Score = 149 bits (164), Expect = 6e-31
Identities = 360/541 (67%), Gaps = 8/541 (1%)
Strand=Plus/Plus
Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938
||| ||| |||| ||||| |||||||| | ||| | || ||||| || ||||| |||||
Sbjct 167433 ATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTC 167492
Query 132939 GTTGCTGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996
|| ||||| ||||| || ||||| | || | || || | ||||||||| || ||
Sbjct 167493 ATT--TGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCA 167550
Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056
|| || || |||||| | || ||||| || || ||||| | | || || || ||
Sbjct 167551 AAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAG 167610
Query 133057 GTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116
| || | ||||||| ||||| | ||||| || ||||| | || || || ||
Sbjct 167611 TTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGA 167670
Query 133117 ATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGT 133174
| || || || || || || || | ||| | || | | | | | | || || |
Sbjct 167671 AGTGTCTCAATTGCATTGAATAA--GAAGTCACGCTGCTTTGCATCTCTAATATAAGTTT 167728
Query 133175 CGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAA 133234
| || | | || ||||| ||||||||||| || ||||| || ||||| || || || |
Sbjct 167729 CAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGA 167788
Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGA 133294
|| | || || || || || ||||| ||| ||||||||| | | ||| || || |
Sbjct 167789 AGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTA 167848
Query 133295 CGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGT 133354
||||||| || || || || || || | || ||| ||| ||||| ||||| |
Sbjct 167849 CGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAAT 167908
Query 133355 CGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAA 133414
| || | | |||||| | | || || || | || || |||||||| ||||| |
Sbjct 167909 CCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGA 167968
Query 133415 A 133415
|
Sbjct 167969 A 167969
>seq296
Length=113092
Score = 111 bits (122), Expect = 2e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || ||||||||||| | || || ||| | |
Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATCA 113024
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| | || | ||| |||| |||||||| |||||||| | ||||||
Sbjct 113023 GACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 112964
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| || ||||| |||| || | || || | | |||||||||
Sbjct 112963 CAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAAT 112904
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| || ||| | || |||||||||| || |||
Sbjct 112903 ATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGT 112868
>seq442
Length=86436
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| | ||||| || || || ||| |||| |||||| | |
Sbjct 25216 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCT 25157
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || ||| | | || | || || | || || || |||||||| | || ||
Sbjct 25156 GACACGATTGAAAATG-TCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 25098
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | || | || || ||||| | || || | || || | | |||||||||
Sbjct 25097 ACAGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACATTGAGCGACTACAA 25038
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| || | || || || || ||| ||||
Sbjct 25037 CATCCAAAAAGAGTCAACACTTCACTTAGTGTTGCG 25002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500010087536000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |