Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq119 149 6e-31 seq296 111 2e-19 seq442 86.0 6e-12 >seq119 Length=197918 Score = 149 bits (164), Expect = 6e-31 Identities = 360/541 (67%), Gaps = 8/541 (1%) Strand=Plus/Plus Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 ||| ||| |||| ||||| |||||||| | ||| | || ||||| || ||||| ||||| Sbjct 167433 ATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTC 167492 Query 132939 GTTGCTGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996 || ||||| ||||| || ||||| | || | || || | ||||||||| || || Sbjct 167493 ATT--TGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCA 167550 Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056 || || || |||||| | || ||||| || || ||||| | | || || || || Sbjct 167551 AAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAG 167610 Query 133057 GTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116 | || | ||||||| ||||| | ||||| || ||||| | || || || || Sbjct 167611 TTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGA 167670 Query 133117 ATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGT 133174 | || || || || || || || | ||| | || | | | | | | || || | Sbjct 167671 AGTGTCTCAATTGCATTGAATAA--GAAGTCACGCTGCTTTGCATCTCTAATATAAGTTT 167728 Query 133175 CGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAA 133234 | || | | || ||||| ||||||||||| || ||||| || ||||| || || || | Sbjct 167729 CAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGA 167788 Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGA 133294 || | || || || || || ||||| ||| ||||||||| | | ||| || || | Sbjct 167789 AGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTA 167848 Query 133295 CGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGT 133354 ||||||| || || || || || || | || ||| ||| ||||| ||||| | Sbjct 167849 CGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAAT 167908 Query 133355 CGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAA 133414 | || | | |||||| | | || || || | || || |||||||| ||||| | Sbjct 167909 CCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGA 167968 Query 133415 A 133415 | Sbjct 167969 A 167969 >seq296 Length=113092 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || ||||||||||| | || || ||| | | Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATCA 113024 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| |||||||| |||||||| | |||||| Sbjct 113023 GACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 112964 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || ||||| |||| || | || || | | ||||||||| Sbjct 112963 CAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAAT 112904 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || |||||||||| || ||| Sbjct 112903 ATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGT 112868 >seq442 Length=86436 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | ||||| || || || ||| |||| |||||| | | Sbjct 25216 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCT 25157 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | || | || || | || || || |||||||| | || || Sbjct 25156 GACACGATTGAAAATG-TCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 25098 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || || ||||| | || || | || || | | ||||||||| Sbjct 25097 ACAGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACATTGAGCGACTACAA 25038 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || | || || || || ||| |||| Sbjct 25037 CATCCAAAAAGAGTCAACACTTCACTTAGTGTTGCG 25002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500010087536000