Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq343 150 2e-31 seq10 105 8e-18 seq782 98.7 1e-15 >seq343 Length=103200 Score = 150 bits (166), Expect = 2e-31 Identities = 460/699 (66%), Gaps = 34/699 (5%) Strand=Plus/Minus Query 112294 AGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGA 112353 || ||||| || ||||||||||| |||||||| || || || | || |||| || Sbjct 6091 AGGCTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAACCGGAAAT 6032 Query 112354 GTAATCAAAAGAATTTGGGTGTGATCAAGA----GTTCCAACCTCTGTACAGAAATCTTG 112409 |||||| ||||| | || || ||| | |||| || | ||||| ||||| | Sbjct 6031 CAAATCAACAGAATCTTGG---GA-CAATACGTTGTTCGAATTTATGTACGGAAATAGTA 5976 Query 112410 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 112469 ||| | || || ||||| || || ||||| | |||||||| ||| | || Sbjct 5975 CAATATTCAAGTAAGGATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTT----AAA 5920 Query 112470 TATGTGGATC---CAGAGACAAAGACATT-TGATTATGAAAAACTCCACGAAGTTACGAA 112525 ||||| || || | | |||| | | ||| | | | ||| | | |||||||| || Sbjct 5919 TATGTTTGTCAAACAAAATCGAAGAGAATATGACTTTCACAAATTGAAGGAAGTTACAAA 5860 Query 112526 AACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 112585 || ||||||| || | || | | ||||| | ||||| || |||||||| || Sbjct 5859 AATAGTCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAAGC 5800 Query 112586 TCGTAAA---TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 | ||| || || | ||||| ||||| ||||| | || || ||||| | || || Sbjct 5799 T---AAACGGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGA 5743 Query 112643 TGTATTCATTCTTTGTCGCCACGC-ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGC 112701 || || ||| || | | || || ||| || |||||||||| | | ||| | Sbjct 5742 TGCTTTTATT-TTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATTTAAATCAAC 5684 Query 112702 GTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGG--T 112759 |||||||| ||||| ||| | | || | ||| | || | || || ||||| | Sbjct 5683 AAATATTTGAAACAATTTATTATGGTGCATTGGAGTCCAGCTGTGAATTAGCAGAACAAT 5624 Query 112760 TGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA 112819 || || |||||||| || | || || | ||| | ||| |||| || | |||| ||| Sbjct 5623 TG--GGACCATATGAGACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGA 5566 Query 112820 TATGTGGGAAGGTGAGA---CCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCAT 112876 ||||||||| | ||| ||| | | || ||||| ||||| || ||| || Sbjct 5565 TATGTGGGA---TAAGACTCCCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAAT 5509 Query 112877 CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGC 112936 || || ||||| || || || || || ||||||||||| ||||| || || || Sbjct 5508 TAAAAAGTTTGGTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGC 5449 Query 112937 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 || || |||||||||||||| |||||||||| ||||| Sbjct 5448 TCAGATTTTGGGTAATAATGAGAGCTTTGAACCTTACAC 5410 >seq10 Length=552578 Score = 105 bits (116), Expect = 8e-18 Identities = 259/387 (67%), Gaps = 8/387 (2%) Strand=Plus/Plus Query 13599 TATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 13658 ||||| || ||| ||||||| ||| ||| || || ||| | ||||||| ||| || Sbjct 300330 TATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAG 300389 Query 13659 ACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 13716 ||||| ||||| ||| | ||| || | ||| | || || | | | ||| || Sbjct 300390 ACACCATTCTATCCAAGAA--GTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCA 300447 Query 13717 TAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATG 13776 | | |||||||| || ||||||| ||| |||||| || || | || || |||| Sbjct 300448 TTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATG 300507 Query 13777 AATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACC-GAGG-GTATCAAACA 13834 |||| || || |||| | | | || || || | ||| |||||| || || | || | Sbjct 300508 AATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAA 300567 Query 13835 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 13894 |||| || | || | || ||| | ||| | ||||| | || | | | ||||| Sbjct 300568 TTTCATTAAAGC--AACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTG 300625 Query 13895 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 13954 |||||| || |||||||| || |||||||||||| | ||| | ||||| || | | || Sbjct 300626 GGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGA 300685 Query 13955 CGAATATGTAGTAGCAACGGGTGAGAC 13981 || | |||| | || || || || || Sbjct 300686 AGATTTTGTAATTGCTACAGGCGAAAC 300712 >seq782 Length=54866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 279/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || ||||| ||||| || | || || || |||||||| || | |||| | || | Sbjct 42923 CCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGAATAATTGGAACATAATAT 42864 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 175960 || |||||||| | || || ||||||||| |||| || | |||||||| ||| Sbjct 42863 TCAGGCTCAATACGCTGATTGTCTTCATCCAAAAAGTTAAGCAAAGGATCATCATGTGGA 42804 Query 175961 TCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGT--TTG-AGAC 176017 | ||||| | || || | | ||| | || || ||||| | | ||| ||| Sbjct 42803 TGGAAGATGTGACGAGCTAATGGCGAAAGCATCGTGAAAATATAACGAGGACTTGCAGA- 42745 Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 ||| || || ||| | | ||||||||||||||||||| || | ||| | ||| ||| Sbjct 42744 --ATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTAGGTTGAAGCAAATTAATA 42687 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGC-GAGAGAGACTTC 176136 ||||| || | || | | ||||| || ||||| || | || || || ||||| Sbjct 42686 TTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGT-ACTGCAAAGTGAAACTTC 42628 Query 176137 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196 ||| || || || ||||||| || || || | | |||||||| || ||||| | ||| Sbjct 42627 ACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCAACTGAGCAACTTTAACCTC 42568 Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256 | ||| ||| | || |||| | || | || ||||| |||||| | ||| Sbjct 42567 CTTTTTGTCATTACGTTTAAAGCATGTAAAAATGATTTTACGTTGACCAGGCTTAAAACC 42508 Query 176257 ATC 176259 ||| Sbjct 42507 ATC 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620540464738000