Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq343 150 2e-31
seq782 104 3e-17
seq10 102 1e-16
>seq343
Length=103200
Score = 150 bits (166), Expect = 2e-31
Identities = 453/686 (66%), Gaps = 30/686 (4%)
Strand=Plus/Plus
Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006
||||| |||||||||| |||||||||||||| || || || || || ||||| ||||||
Sbjct 5410 GTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATT 5469
Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGAACA 106063
||||| || || || || || ||||| ||||| | || ||| || ||| |
Sbjct 5470 GGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTT---TAATTTTTTCTTTTAGAGCT 5526
Query 106064 TCCCAGTCGTAGTTGAGCTTGGTTTCAC-CTT--CCCACATATCAAATTGAAGCACCCCT 106120
||||| || | | | ||| | ||| ||||||||||| |||| | || |||
Sbjct 5527 TCCCAATCCCAC---AAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATACACCT 5583
Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACC---TTGGGCTTCAGCCAATTCA 106177
| ||| ||| | || || | |||||||| | || ||| ||| || ||||||
Sbjct 5584 TTTGACACCGGACATCCATCGTAAGTCTCATATGGTCCCAATTG---TTCTGCTAATTCA 5640
Query 106178 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 106237
||||| | ||||| | | | ||| || |||||||| || | ||| | | ||
Sbjct 5641 CAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTC 5700
Query 106238 GCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAAC 106296
||||| | || ||| ||| | | || ||||||||| |||| || | ||||||||
Sbjct 5701 GCTTCGTTAGATTCATATG-GCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAAC 5759
Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGTC-TCAACGGGATA 106353
|| | |||||||| | |||| | || ||| ||| || || |||||||||||
Sbjct 5760 TCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGC---TTCTTCAACGGGATA 5816
Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 106413
||||| || ||| | | || | ||| | || || || ||||| | ||| | |
Sbjct 5817 GTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAA 5876
Query 106414 TTTTTCATAATCAAAAGTGCGAGTC--TCTTCATTGACATACTTTGGAAGGGCGATTGAT 106471
||| | | | ||| | | | || | || |||||| || | | || ||||||
Sbjct 5877 TTTGTGAAAGTCATA--TTCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAATTGAT 5934
Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531
|| ||||| ||||| || ||||||||| || || | || ||||| ||||| ||
Sbjct 5935 GCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATAAA 5994
Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591
|| |||| || ||||| | ||||| ||| || || |||||| | ||||||
Sbjct 5995 TTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTA 6054
Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTC 106617
|| ||||| || || || || || ||
Sbjct 6055 TACAGCATATAAGGTGTACCAGTTTC 6080
>seq782
Length=54866
Score = 104 bits (114), Expect = 3e-17
Identities = 216/318 (68%), Gaps = 8/318 (3%)
Strand=Plus/Minus
Query 168289 ATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAA 168348
|||| ||||| |||||||| | ||||| || ||||||||||| || |||| | |||
Sbjct 42925 ATCCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGAATAATTGGAACATAAT 42866
Query 168349 AGTCTGGTTCAATTGAGCGCCCAT---CATCATCCAAGTAGTTGAGGATCGGGTCATCCC 168405
| || || ||||| ||| || | |||||||| |||| || | || |||||
Sbjct 42865 ATTCAGGCTCAATA---CGCTGATTGTCTTCATCCAAAAAGTTAAGCAAAGGATCATCAT 42809
Query 168406 GAGGATCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAG 168465
| |||| ||||| | ||||| | | ||| | |||||||| || | | |
Sbjct 42808 GTGGATGGAAGATGTGACGAGCTAATGGCGAAAGCATCGTGAAAATATAACGAGGACTTG 42749
Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525
|| ||| || || ||| | | |||||||||||| |||||| |||| ||| | ||||
Sbjct 42748 CAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTAGGTTGAAGCAAATTAA 42689
Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACT 168584
| ||||| || || | | ||||| |||||||| || | || ||| || |||
Sbjct 42688 TATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGT-ACTGCAAAGTGAAACT 42630
Query 168585 TCACCATGGTGGTACGCA 168602
|||||||| || || |||
Sbjct 42629 TCACCATGATGATATGCA 42612
Score = 82.4 bits (90), Expect = 9e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 169337 TGAAGCGTCGCGGACATTCTTACA-CTTCCCACGGAGAGGAAAGACGCCATAGTGATCAC 169395
|| ||| || ||||| || | || ||| ||||| || || || || ||||| ||||||
Sbjct 41838 TGTAGCATCACGGACGTT-TAGCAGCTTACCACGAAGTGGGAAAACACCATAAAGATCAC 41780
Query 169396 GTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAA 169455
||||||| || |||||| ||| || | ||||| ||||| || ||||| || | |
Sbjct 41779 GTCCAACAACACCGAGACCACTGACAGCTAATGTTTTGGCTGAGTCTCCCTCAGTTAAGA 41720
Query 169456 TGAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAA 169515
| | ||||| || | || | | || || || | |||||| || ||||| || ||||
Sbjct 41719 TTAATGTACAATTAACTGAATTCCTAGTTCCTGCATCGTTTGCATCTTCCAATTTTGGAA 41660
Query 169516 TACCAGTAATTTTGGACTT 169534
| || | | ||| |||||
Sbjct 41659 TTCCCTTCAATTTCGACTT 41641
>seq10
Length=552578
Score = 102 bits (112), Expect = 1e-16
Identities = 258/387 (67%), Gaps = 8/387 (2%)
Strand=Plus/Plus
Query 6906 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 6965
||||| || ||| | ||||| ||| ||| || || ||| | ||||||| ||| ||
Sbjct 300330 TATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAG 300389
Query 6966 ACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023
||||| ||||| ||| | ||| || | ||| | || || | | | ||| ||
Sbjct 300390 ACACCATTCTATCCAAGAA--GTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCA 300447
Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083
| | ||||||||| || ||||||| ||| ||| || || || | || || ||||
Sbjct 300448 TTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATG 300507
Query 7084 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGG-GTATCAAACA 7141
|||| || || |||| | | | || || |||| ||| |||||| || || | || |
Sbjct 300508 AATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAA 300567
Query 7142 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201
|||| || | || | || ||| | ||| | ||||| | || | | | |||||
Sbjct 300568 TTTCATTAAAGC--AACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTG 300625
Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261
|||||| || |||||||| || ||||| |||||| | ||| | ||||| || | | ||
Sbjct 300626 GGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGA 300685
Query 7262 CGAATATGTAGTAGCAACGGGTGAGAC 7288
|| | |||| | || || || || ||
Sbjct 300686 AGATTTTGTAATTGCTACAGGCGAAAC 300712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589788871871000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |