Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq343 150 2e-31 seq782 104 3e-17 seq10 102 1e-16 >seq343 Length=103200 Score = 150 bits (166), Expect = 2e-31 Identities = 453/686 (66%), Gaps = 30/686 (4%) Strand=Plus/Plus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| |||||||||| |||||||||||||| || || || || || ||||| |||||| Sbjct 5410 GTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATT 5469 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGAACA 106063 ||||| || || || || || ||||| ||||| | || ||| || ||| | Sbjct 5470 GGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTT---TAATTTTTTCTTTTAGAGCT 5526 Query 106064 TCCCAGTCGTAGTTGAGCTTGGTTTCAC-CTT--CCCACATATCAAATTGAAGCACCCCT 106120 ||||| || | | | ||| | ||| ||||||||||| |||| | || ||| Sbjct 5527 TCCCAATCCCAC---AAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATACACCT 5583 Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACC---TTGGGCTTCAGCCAATTCA 106177 | ||| ||| | || || | |||||||| | || ||| ||| || |||||| Sbjct 5584 TTTGACACCGGACATCCATCGTAAGTCTCATATGGTCCCAATTG---TTCTGCTAATTCA 5640 Query 106178 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 106237 ||||| | ||||| | | | ||| || |||||||| || | ||| | | || Sbjct 5641 CAGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTC 5700 Query 106238 GCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAAC 106296 ||||| | || ||| ||| | | || ||||||||| |||| || | |||||||| Sbjct 5701 GCTTCGTTAGATTCATATG-GCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAAC 5759 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGTC-TCAACGGGATA 106353 || | |||||||| | |||| | || ||| ||| || || ||||||||||| Sbjct 5760 TCCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGC---TTCTTCAACGGGATA 5816 Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 106413 ||||| || ||| | | || | ||| | || || || ||||| | ||| | | Sbjct 5817 GTAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAA 5876 Query 106414 TTTTTCATAATCAAAAGTGCGAGTC--TCTTCATTGACATACTTTGGAAGGGCGATTGAT 106471 ||| | | | ||| | | | || | || |||||| || | | || |||||| Sbjct 5877 TTTGTGAAAGTCATA--TTCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAATTGAT 5934 Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531 || ||||| ||||| || ||||||||| || || | || ||||| ||||| || Sbjct 5935 GCTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATAAA 5994 Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591 || |||| || ||||| | ||||| ||| || || |||||| | |||||| Sbjct 5995 TTCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTA 6054 Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTC 106617 || ||||| || || || || || || Sbjct 6055 TACAGCATATAAGGTGTACCAGTTTC 6080 >seq782 Length=54866 Score = 104 bits (114), Expect = 3e-17 Identities = 216/318 (68%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 168289 ATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAA 168348 |||| ||||| |||||||| | ||||| || ||||||||||| || |||| | ||| Sbjct 42925 ATCCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGAATAATTGGAACATAAT 42866 Query 168349 AGTCTGGTTCAATTGAGCGCCCAT---CATCATCCAAGTAGTTGAGGATCGGGTCATCCC 168405 | || || ||||| ||| || | |||||||| |||| || | || ||||| Sbjct 42865 ATTCAGGCTCAATA---CGCTGATTGTCTTCATCCAAAAAGTTAAGCAAAGGATCATCAT 42809 Query 168406 GAGGATCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAG 168465 | |||| ||||| | ||||| | | ||| | |||||||| || | | | Sbjct 42808 GTGGATGGAAGATGTGACGAGCTAATGGCGAAAGCATCGTGAAAATATAACGAGGACTTG 42749 Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525 || ||| || || ||| | | |||||||||||| |||||| |||| ||| | |||| Sbjct 42748 CAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTAGGTTGAAGCAAATTAA 42689 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACT 168584 | ||||| || || | | ||||| |||||||| || | || ||| || ||| Sbjct 42688 TATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGT-ACTGCAAAGTGAAACT 42630 Query 168585 TCACCATGGTGGTACGCA 168602 |||||||| || || ||| Sbjct 42629 TCACCATGATGATATGCA 42612 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 169337 TGAAGCGTCGCGGACATTCTTACA-CTTCCCACGGAGAGGAAAGACGCCATAGTGATCAC 169395 || ||| || ||||| || | || ||| ||||| || || || || ||||| |||||| Sbjct 41838 TGTAGCATCACGGACGTT-TAGCAGCTTACCACGAAGTGGGAAAACACCATAAAGATCAC 41780 Query 169396 GTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAA 169455 ||||||| || |||||| ||| || | ||||| ||||| || ||||| || | | Sbjct 41779 GTCCAACAACACCGAGACCACTGACAGCTAATGTTTTGGCTGAGTCTCCCTCAGTTAAGA 41720 Query 169456 TGAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAA 169515 | | ||||| || | || | | || || || | |||||| || ||||| || |||| Sbjct 41719 TTAATGTACAATTAACTGAATTCCTAGTTCCTGCATCGTTTGCATCTTCCAATTTTGGAA 41660 Query 169516 TACCAGTAATTTTGGACTT 169534 | || | | ||| ||||| Sbjct 41659 TTCCCTTCAATTTCGACTT 41641 >seq10 Length=552578 Score = 102 bits (112), Expect = 1e-16 Identities = 258/387 (67%), Gaps = 8/387 (2%) Strand=Plus/Plus Query 6906 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 6965 ||||| || ||| | ||||| ||| ||| || || ||| | ||||||| ||| || Sbjct 300330 TATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAG 300389 Query 6966 ACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023 ||||| ||||| ||| | ||| || | ||| | || || | | | ||| || Sbjct 300390 ACACCATTCTATCCAAGAA--GTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCA 300447 Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083 | | ||||||||| || ||||||| ||| ||| || || || | || || |||| Sbjct 300448 TTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATG 300507 Query 7084 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGG-GTATCAAACA 7141 |||| || || |||| | | | || || |||| ||| |||||| || || | || | Sbjct 300508 AATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAA 300567 Query 7142 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 |||| || | || | || ||| | ||| | ||||| | || | | | ||||| Sbjct 300568 TTTCATTAAAGC--AACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTG 300625 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261 |||||| || |||||||| || ||||| |||||| | ||| | ||||| || | | || Sbjct 300626 GGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGA 300685 Query 7262 CGAATATGTAGTAGCAACGGGTGAGAC 7288 || | |||| | || || || || || Sbjct 300686 AGATTTTGTAATTGCTACAGGCGAAAC 300712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589788871871000