Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1563 134 2e-26 >seq1563 Length=26157 Score = 134 bits (148), Expect = 2e-26 Identities = 404/617 (65%), Gaps = 9/617 (1%) Strand=Plus/Minus Query 154443 ATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTG 154502 ||| ||||||| ||| ||||||||||| |||||| || || ||||| | || || Sbjct 24412 ATGATTCCACTCGGCTCCTGCACAATGAAGTTAAATTCAACAACAGAAATGATTCCATGC 24353 Query 154503 TCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTAT-GATACAGACCATGGGTTA 154561 |||| | ||| || || | |||||| | |||| | ||| ||| | | || || Sbjct 24352 TCATTCCGTCACTTTACTGACATTCATCCATTTGCACCAGTTGAT-CAGGCTAAAGGATA 24294 Query 154562 TCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTAT 154621 ||| ||||| | || | |||| | ||||| ||||| || | ||| || Sbjct 24293 TCATAAAATGTTTTCGGAACTTGAGAATGACCTCTGTGAGATCACTGGATATGACAAAAT 24234 Query 154622 ATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC 154681 ||||| ||||| ||| || |||| ||||| ||||| ||||| ||||| | | Sbjct 24233 CTCATTGCAACCAAACAGCGGTGCACAAGGTGAATATGCTGGACTTCGTGCAATTCGTGG 24174 Query 154682 ATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACA 154741 ||| ||| ||| ||| | || | |||| ||| || || || || | ||||| || Sbjct 24173 ATATCATGAAGCTAATGGACAACATCACAGAACTGTCTGCTTAATTCCTGTCTCAGCTCA 24114 Query 154742 TGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTC-AAGT--G 154798 |||||||||||| ||||||||| |||||||| |||| ||| | | || |||| | Sbjct 24113 TGGAACTAATCCAGCTAGTGCTCAAATGGCAGGCATGAGAGTCGAACCGATCAAAGTTAG 24054 Query 154799 TGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACA-- 154856 | | ||||| | || ||| | || | || | || || | | |||| || Sbjct 24053 AGCTTCCGATGGAACAATTGACTTGGTTCATTTGAAGGAAAAGGC--TGAAGAATTCAGC 23996 Query 154857 TTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAAC 154916 ||| |||||||| | ||| | ||||| ||||| || |||| | || || | | Sbjct 23995 AACGAATTGTCATGTCTGATGCTCACATATCCATCAACTAATGGAATTTTCGAGGATCAT 23936 Query 154917 ATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCA 154976 || | | ||| | | ||||| | |||| |||||||| ||| | ||||| || Sbjct 23935 GTTGCTGATGTTTGTGATTTGATTCATAAGCATGGCGGTCAGGTGTATTTGGATGGTGCT 23876 Query 154977 AATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCAT 155036 ||| | ||||||||||| ||| | | ||| |||| ||||| | ||||| | ||| Sbjct 23875 AATATGAATGCACAGGTCGGATTGTGCAGACCGGGTGATTATGGATCGGATGTGTCGCAT 23816 Query 155037 CTAAACTTACATAAAAC 155053 | || || ||||| || Sbjct 23815 TTGAATTTGCATAAGAC 23799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 155382 CTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTGTTAGGAACTATGATG 155441 ||||||||||||||||| |||||||| ||| | || ||||| || ||||||| ||||| Sbjct 23218 CTTATGGACTATGGATTTCATGCACCAACAATGTCATGGCCAGTTCAAGGAACTTTGATG 23159 Query 155442 GTAGAACCCACAGAGTCTGAGTCTCTAGATGAACTACAAAGATT 155485 | ||||| |||||||||||| | || ||||| | ||||| Sbjct 23158 ATTGAACCAACAGAGTCTGAGGATAAGGAGGAACTTGATAGATT 23115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579024374836000