Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq442 136 9e-27 seq296 134 3e-26 seq17 89.7 1e-12 seq17255 86.0 1e-11 >seq442 Length=86436 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||||||||| || ||||| ||| | || | ||||| Sbjct 25004 CAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATC 25063 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || || ||||| | || ||||| ||||| ||||| ||||| || || Sbjct 25064 TTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATC 25123 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || |||||| || ||||| ||||| || || ||||| ||||||| || Sbjct 25124 TTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGT 25183 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| ||||| ||||| | ||||| Sbjct 25184 CTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 >seq296 Length=113092 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||| || |||||||| ||| | || | |||||||| | || || ||| Sbjct 112887 GTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTCCAATTGTTTTCCT 112946 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || ||||||||||| ||||| |||||||||||||| || ||| ||| Sbjct 112947 GCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTT 113006 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| || || ||||| | || | || |||||||||||||| Sbjct 113007 ACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTTTTCCTGTCAAAGTC 113066 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 113067 TTGACGAAAATTTGCAT 113083 >seq17 Length=426642 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 125523 CCTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAA 125582 |||||| ||||||||||| | || || ||||| ||| | ||||||| | ||||||| Sbjct 196388 CCTTCCGAAGAAACACGGTCGTGGTGGTCAATCAGCTCTTCGTTTTGCACGTCTTCGAAT 196447 Query 125583 AGAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCAA-TGTTTTTTGC 125641 |||||| | ||||| ||| |||| ||||| || || |||||||||| | || || | Sbjct 196448 GGAAAAGCGCCACAATTATGTGAGAAAAGTGGCTGAAGTTGCAACTCAATTATTCATTTC 196507 Query 125642 AAGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAA 125701 || || | ||| |||| | ||| | | ||||||| || || || ||||| || Sbjct 196508 AA-ACGATAAGCCCAACATTGCTGGCCTCATTCTTGCTGGTTCTGCTGATTTCAAGACCG 196566 Query 125702 AGCTTCTGGAATCTGA 125717 | ||| ||||||| Sbjct 196567 AACTTAGTCAATCTGA 196582 >seq17255 Length=1118 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 ||||| | || ||||||||||| ||||| ||||| || ||||| ||||| ||| || Sbjct 1 AAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACA 60 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 || ||||| || || || || ||||| | ||||| || || || || || ||||| Sbjct 61 TTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTA 120 Query 195127 ACGAACACTTGCATT 195141 ||||| | ||||||| Sbjct 121 ACGAAAATTTGCATT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109111648561175