Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq343 475 4e-129 seq119 370 1e-97 seq1853 95.1 1e-14 seq205 95.1 1e-14 >seq343 Length=103200 Score = 475 bits (526), Expect = 4e-129 Identities = 1065/1601 (67%), Gaps = 23/1601 (1%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||||| ||| | ||| || | |||||||||||| |||||||| || Sbjct 5010 TTTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCC 5069 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | || | ||||||| || ||||| || |||||||| |||| | || Sbjct 5070 AGTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGG 5129 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | ||||||||||| || ||||| || || ||||| || || | ||| || | Sbjct 5130 TTCAGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGA 5189 Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 ||| | || | ||| || | | ||||| || |||||||| || | ||| || | Sbjct 5190 CATTTG-AATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATAT 5248 Query 47212 CTTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 | ||||| | | | | || | || || || || ||| | ||||||||||| || | Sbjct 5249 CATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCA 5308 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 || | ||| | |||||||| || || | |||||| ||||||||| || Sbjct 5309 TATCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTT 5368 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT- 47387 ||||||| ||| || || | ||| |||| | ||||||||| || ||||| | || | Sbjct 5369 GAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAA-AGCTC 5427 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || ||||| ||||||||||||||||| ||||| | ||||| ||| | | Sbjct 5428 TCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAA 5487 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 |||| | ||| | |||| || | || ||||||||| | ||| | Sbjct 5488 TTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTG 5547 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 ||| || ||| | ||||||||| | | ||||| | |||| | |||| || Sbjct 5548 GGAGTCTTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATCCATCGTAA 5607 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 || | ||| || || || ||| || | |||||| || | |||||||||| |||||| Sbjct 5608 GTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAA 5667 Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNN 47687 |||||||||||||||| | |||| ||| | ||||| |||||| | || Sbjct 5668 ATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATATGGCATTCTC 5727 Query 47688 NNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTA 47747 || | |||||||||||||||||| ||||| ||||| || | ||| | Sbjct 5728 ATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAAG 5787 Query 47748 TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNN 47807 || || | ||||||| | ||||| | |||| | ||||||||||| | | Sbjct 5788 TTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAATTC 5847 Query 47808 NNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA----CTT--GTTATTT 47861 || ||| | ||||| | ||| ||| | ||| || | | Sbjct 5848 CTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTTGT 5907 Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 | |||||| |||| | || || ||||||| |||||| || || || |||| | | Sbjct 5908 TTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTTACTT 5967 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 | |||||||| |||||| | ||||| ||| ||| || || || | ||| || ||| Sbjct 5968 GAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGA 6027 Query 47982 TT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 || ||| ||| |||| ||||| || |||||| ||||||| |||||||||| | Sbjct 6028 TTTGATTTCCG--GTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTTCTACTT 6085 Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTA--TAACAGCTCTAGCTTTAT 48096 ||| |||||||| | ||| | | || | ||||||| | || | || ||| | Sbjct 6086 GAGCCTCAATGATTGCGAACCACA-AATCTTGTGCCTTTACTTGACGAATATACCTTCCT 6144 Query 48097 TATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACC 48156 || ||| || ||| | ||| ||||||| || || ||| | | | | Sbjct 6145 --TCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGATTCAAAAAGAC 6202 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 | |||| |||||||||||| |||||||| |||| |||| || | | ||| | Sbjct 6203 CGGGACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGACGCATGA 6262 Query 48217 ATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | | |||||| ||||| | || ||| | || |||| ||| | |||||| || ||| Sbjct 6263 ACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAG 6322 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| | || | || ||||| || | |||||| ||||||| ||||| |||||||||| Sbjct 6323 TATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATATATTG 6382 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | ||||| |||||||| || ||||| || | ||| | || ||||| || || | Sbjct 6383 CAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATA 6442 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 ||||||||||||| |||| |||||||| || ||||| || || | ||||| |||| Sbjct 6443 CTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTT 6502 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 | |||| || | || || ||| || |||||||| ||| ||||| || | Sbjct 6503 TTGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGC 6562 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCT 48557 | |||| | ||||||||||| || || ||| ||||||| Sbjct 6563 ATTGTTTTAATGTATCATAAATACCCTCAATAGAATCATCT 6603 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 48894 TTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGAT 48953 || |||||||| || | || || ||||| ||||| ||||| ||||| || ||||| Sbjct 7116 TTATAAAGATCGTCCATGACTTCGCTAAACTGCTTTTTCGTTTCCTTATGGAGGTTAGAA 7175 Query 48954 ATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGA 49012 || | |||| |||||| | | ||||||||||| |||| ||||| ||| || | Sbjct 7176 ATGGCAATTCGAGCAGCGAGAACAGCATAATCTGCATGATCCGTTGT-CATCGTTGCTGC 7234 Query 49013 TATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAAT 49072 |||| |||||||| |||| ||||| | || ||||||||||| |||| ||| | || Sbjct 7235 AGTTTCGGCTGCTAAATTATCCAATTCCTGTGTTGTTACACCTGTGTATAATCCATTGAT 7294 Query 49073 AACTTT 49078 ||||| Sbjct 7295 TACTTT 7300 >seq119 Length=197918 Score = 370 bits (410), Expect = 1e-97 Identities = 586/834 (70%), Gaps = 18/834 (2%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | ||||||||||| |||| || ||| ||||| || || || ||||| Sbjct 167145 CATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTC 167204 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| ||| |||||||||| ||||||||||| |||||| | ||| | | ||| Sbjct 167205 AAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCC 167264 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 ||||| | || ||| || ||||||| || || || || ||| | |||||||| Sbjct 167265 CAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTGAGT-CATTAAATCACAAT 167323 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || | | ||||| || ||||| || || | |||||| | || || ||||| | Sbjct 167324 TCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAG 167383 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAA 18952 |||||| ||||| || ||||| ||| || || || | | ||||||||| Sbjct 167384 CCTCTGTGATAATTTCAACTACTCT---TTCCTTTGGTGGCTTCTGTTCAAGATGTTTGT 167440 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| || |||||||| |||| ||| ||||| |||||||| || | |||||| |||| Sbjct 167441 ACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAA 167500 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 |||| || || ||||| | |||||| || || | ||| ||||||| ||||| ||| Sbjct 167501 ATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCAC 167560 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||||| || ||||| || ||||||||||||| | || ||| ||| | | |||| | Sbjct 167561 TAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCT 167620 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | | ||||| || | ||||| ||||||||||| || |||||||| | |||||| | Sbjct 167621 TGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAA 167680 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | ||| |||| | ||||| | || |||| ||| ||| | || || |||| Sbjct 167681 TTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTG 167740 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 |||||| || || || | |||||| ||||| || || ||||| || || ||| |||| Sbjct 167741 AGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTT 167800 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 ||| | || ||||| || || | || | ||||| ||||| || || |||||| Sbjct 167801 CTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAG 167860 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGAGGTTAA 19427 || ||||| || ||||||||||| ||||||| | | | ||| |||| | Sbjct 167861 ATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGAT--- 167917 Query 19428 TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 | ||||| || | |||||||| |||||||| ||||| || |||||||| || Sbjct 167918 --TGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 >seq1853 Length=21237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 137162 GAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGGTTA 137221 ||||||||||| | |||| | || | | | |||| || |||||||| ||||||| Sbjct 4130 GAAGGATTAGTATTGAAAGGTCTCGAAACAATTTATGAGCCGGGAAAAAGGCGATGGTTA 4189 Query 137222 AAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTAGTA 137281 ||| | |||||||||||||| | || | | ||||| | |||||| || ||| Sbjct 4190 AAGGTCAAAAAGGATTATTTATTGGAAGGATCAATTGCTGACAGTGCAGACTTGGTGGTA 4249 Query 137282 TTAGGTGCTTATTATGGTAAAGGATCA-AAGGGTGGTATAATGGCTGTATTTTTAATGGG 137340 |||||||||| |||||| || || | | | |||| | | | | | || |||||||| Sbjct 4250 TTAGGTGCTTTTTATGG-AACGGGTAAGATGGGTAATCGATTTAGTATCTTCTTAATGGG 4308 Query 137341 ATGTTATGATGATAATGATTGTAA--ATGGAAAACTGTTACAAAATGTTCA 137389 ||| |||||||| || || || |||||| || || |||||| ||||| Sbjct 4309 ATGCTATGATGAGAA--ATACAAAGTATGGAAGACAGTCACAAAA-GTTCA 4356 >seq205 Length=143123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | |||||||||||| || |||||| || |||||||| ||||||||||| Sbjct 86153 TTCAACAAGATTTTCATTAACGATCCCATCAGATGCAGCAAAAAAAGCTAATACATGAGA 86094 Query 19401 AATAAAATGTTTTTCA-TCTGAGGTTAA-TGTATTCCAATCATTAATATCTTTAGATAAA 19458 ||||| ||| ||| ||| |||| | || |||||| | | ||||| || |||||| Sbjct 86093 GATAAATTGTCGCTCAGTCT----TTAAGTCTAATCCAATAAGTCATATCCTTTGATAAA 86038 Query 19459 TCTACTTCTTCAACTGTCCAAAAA 19482 || ||||| ||||| |||| |||| Sbjct 86037 TCAACTTCCTCAACAGTCCTAAAA 86014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561925938981000