Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq343 475 4e-129
seq119 370 1e-97
seq1853 95.1 1e-14
seq205 95.1 1e-14
>seq343
Length=103200
Score = 475 bits (526), Expect = 4e-129
Identities = 1065/1601 (67%), Gaps = 23/1601 (1%)
Strand=Plus/Plus
Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| || |||||||||| ||| | ||| || | |||||||||||| |||||||| ||
Sbjct 5010 TTTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCC 5069
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
||| || | || | ||||||| || ||||| || |||||||| |||| | ||
Sbjct 5070 AGTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGG 5129
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
||| | | ||||||||||| || ||||| || || ||||| || || | ||| || |
Sbjct 5130 TTCAGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGA 5189
Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211
||| | || | ||| || | | ||||| || |||||||| || | ||| || |
Sbjct 5190 CATTTG-AATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATAT 5248
Query 47212 CTTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268
| ||||| | | | | || | || || || || ||| | ||||||||||| || |
Sbjct 5249 CATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCA 5308
Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328
|| | ||| | |||||||| || || | |||||| ||||||||| ||
Sbjct 5309 TATCGTCATCCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTT 5368
Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT- 47387
||||||| ||| || || | ||| |||| | ||||||||| || ||||| | || |
Sbjct 5369 GAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAA-AGCTC 5427
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || ||||| ||||||||||||||||| ||||| | ||||| ||| | |
Sbjct 5428 TCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAA 5487
Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507
|||| | ||| | |||| || | || ||||||||| | ||| |
Sbjct 5488 TTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTG 5547
Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567
||| || ||| | ||||||||| | | ||||| | |||| | |||| ||
Sbjct 5548 GGAGTCTTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATCCATCGTAA 5607
Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627
|| | ||| || || || ||| || | |||||| || | |||||||||| ||||||
Sbjct 5608 GTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAA 5667
Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNN 47687
|||||||||||||||| | |||| ||| | ||||| |||||| | ||
Sbjct 5668 ATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATATGGCATTCTC 5727
Query 47688 NNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTA 47747
|| | |||||||||||||||||| ||||| ||||| || | ||| |
Sbjct 5728 ATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAAG 5787
Query 47748 TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNN 47807
|| || | ||||||| | ||||| | |||| | ||||||||||| | |
Sbjct 5788 TTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAATTC 5847
Query 47808 NNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA----CTT--GTTATTT 47861
|| ||| | ||||| | ||| ||| | ||| || | |
Sbjct 5848 CTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTTGT 5907
Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921
| |||||| |||| | || || ||||||| |||||| || || || |||| | |
Sbjct 5908 TTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTTACTT 5967
Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981
| |||||||| |||||| | ||||| ||| ||| || || || | ||| || |||
Sbjct 5968 GAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGA 6027
Query 47982 TT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039
|| ||| ||| |||| ||||| || |||||| ||||||| |||||||||| |
Sbjct 6028 TTTGATTTCCG--GTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTTCTACTT 6085
Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTA--TAACAGCTCTAGCTTTAT 48096
||| |||||||| | ||| | | || | ||||||| | || | || ||| |
Sbjct 6086 GAGCCTCAATGATTGCGAACCACA-AATCTTGTGCCTTTACTTGACGAATATACCTTCCT 6144
Query 48097 TATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACC 48156
|| ||| || ||| | ||| ||||||| || || ||| | | | |
Sbjct 6145 --TCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGATTCAAAAAGAC 6202
Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216
| |||| |||||||||||| |||||||| |||| |||| || | | ||| |
Sbjct 6203 CGGGACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGACGCATGA 6262
Query 48217 ATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276
| | |||||| ||||| | || ||| | || |||| ||| | |||||| || |||
Sbjct 6263 ACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAG 6322
Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336
|||| | || | || ||||| || | |||||| ||||||| ||||| ||||||||||
Sbjct 6323 TATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATATATTG 6382
Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396
| | | ||||| |||||||| || ||||| || | ||| | || ||||| || || |
Sbjct 6383 CAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATA 6442
Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456
||||||||||||| |||| |||||||| || ||||| || || | ||||| ||||
Sbjct 6443 CTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTT 6502
Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516
| |||| || | || || ||| || |||||||| ||| ||||| || |
Sbjct 6503 TTGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGC 6562
Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCT 48557
| |||| | ||||||||||| || || ||| |||||||
Sbjct 6563 ATTGTTTTAATGTATCATAAATACCCTCAATAGAATCATCT 6603
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 48894 TTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGAT 48953
|| |||||||| || | || || ||||| ||||| ||||| ||||| || |||||
Sbjct 7116 TTATAAAGATCGTCCATGACTTCGCTAAACTGCTTTTTCGTTTCCTTATGGAGGTTAGAA 7175
Query 48954 ATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGA 49012
|| | |||| |||||| | | ||||||||||| |||| ||||| ||| || |
Sbjct 7176 ATGGCAATTCGAGCAGCGAGAACAGCATAATCTGCATGATCCGTTGT-CATCGTTGCTGC 7234
Query 49013 TATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAAT 49072
|||| |||||||| |||| ||||| | || ||||||||||| |||| ||| | ||
Sbjct 7235 AGTTTCGGCTGCTAAATTATCCAATTCCTGTGTTGTTACACCTGTGTATAATCCATTGAT 7294
Query 49073 AACTTT 49078
|||||
Sbjct 7295 TACTTT 7300
>seq119
Length=197918
Score = 370 bits (410), Expect = 1e-97
Identities = 586/834 (70%), Gaps = 18/834 (2%)
Strand=Plus/Plus
Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716
||| ||||| | ||||||||||| |||| || ||| ||||| || || || |||||
Sbjct 167145 CATAACTCCACTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTC 167204
Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776
| ||| ||| |||||||||| ||||||||||| |||||| | ||| | | |||
Sbjct 167205 AAGTGAAATAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCC 167264
Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835
||||| | || ||| || ||||||| || || || || ||| | ||||||||
Sbjct 167265 CAATTCACCCAATAAATGATCAGCAACAAATTCTATGTACTGAGT-CATTAAATCACAAT 167323
Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895
|||| || | | ||||| || ||||| || || | |||||| | || || ||||| |
Sbjct 167324 TCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAG 167383
Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAA 18952
|||||| ||||| || ||||| ||| || || || | | |||||||||
Sbjct 167384 CCTCTGTGATAATTTCAACTACTCT---TTCCTTTGGTGGCTTCTGTTCAAGATGTTTGT 167440
Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012
|||| || |||||||| |||| ||| ||||| |||||||| || | |||||| ||||
Sbjct 167441 ACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAA 167500
Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072
|||| || || ||||| | |||||| || || | ||| ||||||| ||||| |||
Sbjct 167501 ATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCAC 167560
Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132
|||||| || ||||| || ||||||||||||| | || ||| ||| | | |||| |
Sbjct 167561 TAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCT 167620
Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192
| | ||||| || | ||||| ||||||||||| || |||||||| | |||||| |
Sbjct 167621 TGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAA 167680
Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252
| | ||| |||| | ||||| | || |||| ||| ||| | || || ||||
Sbjct 167681 TTGCATTGAATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTG 167740
Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312
|||||| || || || | |||||| ||||| || || ||||| || || ||| ||||
Sbjct 167741 AGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTT 167800
Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372
||| | || ||||| || || | || | ||||| ||||| || || ||||||
Sbjct 167801 CTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAG 167860
Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC--TGAGGTTAA 19427
|| ||||| || ||||||||||| ||||||| | | | ||| |||| |
Sbjct 167861 ATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGAT--- 167917
Query 19428 TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481
| ||||| || | |||||||| |||||||| ||||| || |||||||| ||
Sbjct 167918 --TGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969
>seq1853
Length=21237
Score = 95.1 bits (104), Expect = 1e-14
Identities = 163/231 (71%), Gaps = 7/231 (3%)
Strand=Plus/Plus
Query 137162 GAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGGTTA 137221
||||||||||| | |||| | || | | | |||| || |||||||| |||||||
Sbjct 4130 GAAGGATTAGTATTGAAAGGTCTCGAAACAATTTATGAGCCGGGAAAAAGGCGATGGTTA 4189
Query 137222 AAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTAGTA 137281
||| | |||||||||||||| | || | | ||||| | |||||| || |||
Sbjct 4190 AAGGTCAAAAAGGATTATTTATTGGAAGGATCAATTGCTGACAGTGCAGACTTGGTGGTA 4249
Query 137282 TTAGGTGCTTATTATGGTAAAGGATCA-AAGGGTGGTATAATGGCTGTATTTTTAATGGG 137340
|||||||||| |||||| || || | | | |||| | | | | | || ||||||||
Sbjct 4250 TTAGGTGCTTTTTATGG-AACGGGTAAGATGGGTAATCGATTTAGTATCTTCTTAATGGG 4308
Query 137341 ATGTTATGATGATAATGATTGTAA--ATGGAAAACTGTTACAAAATGTTCA 137389
||| |||||||| || || || |||||| || || |||||| |||||
Sbjct 4309 ATGCTATGATGAGAA--ATACAAAGTATGGAAGACAGTCACAAAA-GTTCA 4356
>seq205
Length=143123
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Minus
Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400
||| || | |||||||||||| || |||||| || |||||||| |||||||||||
Sbjct 86153 TTCAACAAGATTTTCATTAACGATCCCATCAGATGCAGCAAAAAAAGCTAATACATGAGA 86094
Query 19401 AATAAAATGTTTTTCA-TCTGAGGTTAA-TGTATTCCAATCATTAATATCTTTAGATAAA 19458
||||| ||| ||| ||| |||| | || |||||| | | ||||| || ||||||
Sbjct 86093 GATAAATTGTCGCTCAGTCT----TTAAGTCTAATCCAATAAGTCATATCCTTTGATAAA 86038
Query 19459 TCTACTTCTTCAACTGTCCAAAAA 19482
|| ||||| ||||| |||| ||||
Sbjct 86037 TCAACTTCCTCAACAGTCCTAAAA 86014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561925938981000
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