Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq119 333 3e-86 seq205 87.8 2e-12 >seq119 Length=197918 Score = 333 bits (368), Expect = 3e-86 Identities = 606/881 (69%), Gaps = 12/881 (1%) Strand=Plus/Plus Query 36828 TAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTTT 36887 || ||||| | ||||| || || | ||| | | |||| ||||||||| | ||| Sbjct 167101 TAGAAATCAGCGTCTAATGTGAAAACTTGTTCTTGACGACTAGACATAACTCCACTCTTT 167160 Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 |||||||| ||||| || |||||| || |||||||| || || ||||| ||| |||| Sbjct 167161 TGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCC 167220 Query 36948 ATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAGC 37007 ||||| |||||||| |||||||| | || | | ||||| || | Sbjct 167221 ATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCCAATAAA 167280 Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 ||| ||||||||||||||||| | | ||||| ||| | || || || | | || Sbjct 167281 TGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACATCTTA 167340 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 ||||||| ||| || | |||| || || ||| ||||||| ||| | | || | | Sbjct 167341 ACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATTTCA 167400 Query 37128 ACAATAACTTCTTCAGTTGGGGGATATTTT---AAATATTTAAACAATAAACATGCAAAA 37184 || | || ||| |||| || | | | | || ||| ||| ||| |||||||| Sbjct 167401 ACTA---CTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCAAAG 167457 Query 37185 TCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATT 37244 |||| ||| | ||||| ||||| || | |||||| ||||| || || ||||||||| Sbjct 167458 TCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGCATT 167517 Query 37245 AAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCA 37304 || ||||| || |||||||||||||| |||||||| ||| ||||||||| ||||| Sbjct 167518 AATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCTTCG 167577 Query 37305 ACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttt 37364 || |||||||| || | || ||| ||| || ||| | | | || ||||| ||| Sbjct 167578 ACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATCCAATTT 167637 Query 37365 tttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAG 37424 | ||| || ||||| ||||||||| || ||| |||||||| || || | ||| Sbjct 167638 AAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAGAAG 167697 Query 37425 t-ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483 | | ||| | |||| | |||||||| ||||||| || ||||| || ||||| Sbjct 167698 TCACGCTGCTTTGC-ATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAGTG 167756 Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 | |||||| ||||| || || || ||||| || | | |||||| | | |||||| || Sbjct 167757 TACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACTTC 167816 Query 37544 GTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGC 37603 | | || | || | ||| || ||||| || || |||||| || ||||||||||| Sbjct 167817 CTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAAAGC 167876 Query 37604 AAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCCAATCATTAATA 37661 | |||| |||||||| | || || |||| | || ||||| || | ||| Sbjct 167877 TAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGA--TTGTTCCAGTCTTCCATA 167934 Query 37662 TCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGC 37702 |||||||||||||| ||||| || || ||||| || || || Sbjct 167935 TCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTGGC 167975 >seq205 Length=143123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 ||||||||||| ||||||||| || ||||| ||||| | |||| ||||| ||| Sbjct 86143 TTTTCATTAACGATCCCATCAGATGCAGCAAAAAAAGCTAATACATGAGAGATAAATTGT 86084 Query 37626 CTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCA 37685 | ||| ||| | | | |||||| | | ||||| ||||||||||||||||| ||| Sbjct 86083 CGCTCAGTCTTTAAG--TCTAATCCAATAAGTCATATCCTTTGATAAATCAACTTCCTCA 86026 Query 37686 ACGGTCCAAAAACTTGC 37702 || |||| |||||| || Sbjct 86025 ACAGTCCTAAAACTAGC 86009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592124111941000