Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq442 87.8 1e-12 >seq6 Length=649598 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||| ||||||| |||||||||||| ||||||| || ||||||||||| | || || || Sbjct 425520 TCTTCCAGTGTTGGATAAAAGATTCGTTCACAGATCAATTGAGCAATACGATCGCCTTTG 425461 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 || ||| || || |||||||| |||| || || || | || || || || Sbjct 425460 GCGACATTAAAATCGACATCAGAATGATTAAACATGACAACACCTAAATTTCCTCTATAG 425401 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 || || || | || |||||||| || || ||||| | || | |||| |||||| || Sbjct 425400 TCTTCGTCTACAACTCCAGCACCAACATCAATGAAATTTTTTGCTGCTAATCCAGAACGT 425341 Query 9235 GGCGCGATTCGACCGTAGCATCC 9257 || || ||||| || || || || Sbjct 425340 GGTGCAATTCGTCCATAACAGCC 425318 >seq442 Length=86436 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| || || || || ||||||||| || ||||| || | | ||| Sbjct 24999 AGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGA 25058 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || || || ||||| |||| ||||||||||| | |||| || ||| Sbjct 25059 CCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCC 25118 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||| || || | ||| Sbjct 25119 TTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTA 25178 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || || || |||||||| ||||| || || |||||||| |||| Sbjct 25179 ATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGTGT 25221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380816774331075