Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq343 168 3e-37 >seq343 Length=103200 Score = 168 bits (186), Expect = 3e-37 Identities = 264/378 (70%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || |||||||||||||||| ||||||||| | ||||| ||||| | ||||||||| Sbjct 6258 CATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTT 6317 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||| || |||| ||| | || ||||||||||| ||||| ||||| ||||| Sbjct 6318 TCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATA 6377 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || ||||| ||| | ||| ||||||||| || || || | ||| || | ||| Sbjct 6378 TATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATT 6437 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 | | ||| | ||||||||||| | ||| |||||| || ||||| | | || | | Sbjct 6438 GTATACTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATGT 6497 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 |||| | | || ||| ||| ||| || ||| |||||||| || |||| || Sbjct 6498 TCCTTTTGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCTTATTAA 6557 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||| || | | | |||||| |||| || | || |||| || |||| || ||| Sbjct 6558 TGCGCATTGTTTTAATGTATCATAAATACCCTCAATAGAATCATCTGACATTGATAGTAA 6617 Query 26293 AAAACAAGAAGATAATTG 26310 || || || |||||||| Sbjct 6618 GAAGCATGAGGATAATTG 6635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252959740851875