Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1563 129 7e-25 >seq1563 Length=26157 Score = 129 bits (142), Expect = 7e-25 Identities = 454/700 (65%), Gaps = 13/700 (2%) Strand=Plus/Plus Query 138234 GTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCT 138293 |||||||| ||||| | ||| | ||||| | ||||| |||| ||| | | || Sbjct 23799 GTCTTATGCAAATTCAAATGCGACACATCCGATCCATAATCACCCGGTCTGCACAATCCG 23858 Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 ||||||||||| | ||| |||||||| | ||| |||||||| |||| | ||||| | Sbjct 23859 ACCTGTGCATTCATATTAGCACCATCCAAATACACCTGACCGCCATGCTTATGAATCAAA 23918 Query 138354 TTACATA--TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCA 138411 | ||| | || | ||| | | |||| | ||| ||| ||||||||||| | || Sbjct 23919 TCACAAACATCAGCAACATGATCCTCGAAAATTC--CATTAGTTGATGGATATGTGAGCA 23976 Query 138412 TAATACATGAGAGTTCAAA--TGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTC 138469 | | |||||| | ||| || |||| | | || || | || | || | ||| Sbjct 23977 TCAGACATGACAATTCGTTGCTGAATTCTTCA--GCCTTTTCCTTCAAATGAACCAAGTC 24034 Query 138470 TATGTTGCCATCATCATCAC--ACTT-GACACCTACAACTTTCATTCCTGCCATGACTGC 138526 || | ||||| | | | |||| || | | ||| |||| |||||||| || Sbjct 24035 AATTGTTCCATCGGAAGCTCTAACTTTGATCGGTTCGACTCTCATGCCTGCCATTTGAGC 24094 Query 138527 ACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC 138586 |||||| |||||||||||||| ||||| | || || | || ||| |||| | || | Sbjct 24095 ACTAGCTGGATTAGTTCCATGAGCTGAGACAGGAATTAAGCAGACAGTTCTGTGATGTTG 24154 Query 138587 TCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCC 138646 ||| ||| ||||||| | | ||||| ||||| ||||| ||||| |||| || Sbjct 24155 TCCATTAGCTTCATGATATCCACGAATTGCACGAAGTCCAGCATATTCACCTTGTGCACC 24214 Query 138647 TGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAA 138706 ||| ||||| ||||| || ||| | || ||||| ||||| | |||| | Sbjct 24215 GCTGTTTGGTTGCAATGAGATTTTGTCATATCCAGTGATCTCACAGAGGTCATTCTCAAG 24274 Query 138707 GTCATCTATTATCTTTTGATAACCCATGGTCTGTATC-ATAGGTGTATGTGGATGCACGT 138765 || | || || ||||| || | | ||| ||| | |||| | |||||| | || Sbjct 24275 TTCCGAAAACATTTTATGATATCCTTTAGCCTG-ATCAACTGGTGCAAATGGATGAATGT 24333 Query 138766 TGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGC 138825 | ||| | |||| || |||| ||||| || || ||||| |||||||||| Sbjct 24334 CAGTAAAGTGACGGAATGAGCATGGAATCATTTCTGTTGTTGAATTTAACTTCATTGTGC 24393 Query 138826 AACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGA 138885 | || ||||||| ||| | ||||| || | ||| ||| | || | | Sbjct 24394 AGGAGCCGAGTGGAATCATTGAGTGAACTAAGGATATATCCTTATTCTCAAGCTGCTTCA 24453 Query 138886 TATATCTCATCATGTCAGTTTCACTGTGATACTTATTGAA 138925 | || || | ||| | ||||||||||| ||||| ||| Sbjct 24454 TGTACCTGACCATTCTGGATTCACTGTGATGCTTATGGAA 24493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 137825 CTCAGACTCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGC 137884 |||||||||||| ||||| | ||||| ||||||| || ||||| || | ||| ||||| Sbjct 23138 CTCAGACTCTGTTGGTTCAATCATCAAAGTTCCTTGAACTGGCCATGACATTGTTGGTGC 23197 Query 137885 ATGAAATCCATAGTCCATAAG 137905 ||||||||||||||||||||| Sbjct 23198 ATGAAATCCATAGTCCATAAG 23218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578810044583000