Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq10 197 2e-45 >seq10 Length=552578 Score = 197 bits (218), Expect = 2e-45 Identities = 403/593 (68%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 ||||| ||||| |||||||| || || | || ||||| | ||| | ||||||||| || Sbjct 300706 CCTGTAGCAATTACAAAATCTTCTGGCTGATCCTGTTGCAACATCATCCACATAGCTTCC 300647 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || || || | ||||| ||||| ||||| || |||||||| || || | || | Sbjct 300646 ACGTAGTCCTTTGCATGACCCCAATCACGTTTTGAGTCAAGATTACCAAGTTCCAAGAAT 300587 Query 47908 TCTTGCTTACCTTCA-GAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGT 47966 ||||| || | || | || ||| | || || ||||| || | || || ||| | Sbjct 300586 TCTTG-TTGCTTTAATGAAATTTTAGCGACTGATCGGGTAATTTTCCTTGTAACGAAATT 300528 Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 ||| || | ||||| |||||||||||||| | ||||||| |||| |||||||| ||||| Sbjct 300527 TTCTCCTCTCCTTGGCGATTCATGATTAAATAAAATACCATTACATGCATACATACCGTA 300468 Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086 | |||||| || || | | |||||||| ||||| ||||| || || |||| ||| Sbjct 300467 AGCTTCACGGTAATTTATAATGATCCAGTATCCATAAAGTTTAGCTACTGCATATGGACT 300408 Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 | ||||||||| ||||| |||| || |||||||| || || || ||||| | ||| Sbjct 300407 TCTTGGATAGAATGGTGTCTTCTCAGTTTGTGGAGTTTCCACTACTTTTCCATACAATTC 300348 Query 48147 ACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCA--TCTCAAGCAAACGGACTGCC 48204 || ||||| ||||| | | ||| | |||| | |||| | | || Sbjct 300347 TGATGTAGATGCCTGATAAAATCTAACTTGTTGATCCAATCCACAAG--TTCTAATAGCA 300290 Query 48205 TCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAAC 48264 ||||| | | || || |||| | | || | | | ||||| || | ||||| Sbjct 300289 TCAAGTAGACGCAATGTTCCTACGCCGTCCACTTCAGCTGTATATTCACTTAAGTCAAAT 300230 Query 48265 GAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGA 48324 || | || |||||| ||||| ||||||||||||| || ||||| || || | Sbjct 300229 GAGATTTTGACATGAGATTGTGCAGCAAGATTATAAATTTCCGTTGGTTTCACTTGAACA 300170 Query 48325 ATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAA 48377 |||| | | |||||| || | || || | || |||||||| || ||||| Sbjct 300169 ATAATCTTAACTAAACATGAACTATCCGTCATATCACCATAATG-AAGTTTAA 300118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665277906353000