Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq343 161 1e-34
seq10 118 1e-21
seq782 87.8 2e-12
>seq343
Length=103200
Score = 161 bits (178), Expect = 1e-34
Identities = 454/685 (66%), Gaps = 24/685 (4%)
Strand=Plus/Minus
Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964
|| ||||| ||||| |||||||| || |||||| | || ||| ||| || ||| ||
Sbjct 6080 GAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAACCGGAAATCAAATCAACAG 6021
Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024
||| | || ||||| | || ||| | || |||||||| || | || || ||||
Sbjct 6020 AATCTTGGGACAATACGTTGTTCGAATTTATGTACGGAAATAGTACAATATTCAAGTAAG 5961
Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA- 76083
||||| || ||||| ||||| |||||||| || | | || |||||| || |
Sbjct 5960 GATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTTAAATATGTTTGTCAAACAAAAT 5901
Query 76084 -GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATC 76142
|| | | | ||| | | | ||| | | ||| | ||||| || || || | |||
Sbjct 5900 CGAAGAGAA--TATGACTTTCACAAATTGAAGGAAGTTACAAAAATAGTCACAAGGAATT 5843
Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGA-GACTGCGCGAAA--GTCTAATA 76199
| || | | ||| || ||||| ||||||||||| || || ||| ||| ||
Sbjct 5842 TGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAA---GCTAAACGGTCAAACT 5786
Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGC 76258
| |||| | |||||||| | || |||||||| | || |||| ||||||||| ||
Sbjct 5785 TTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGATGCTTTTATTTTGATGA 5726
Query 76259 CGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATG 76318
| | ||| ||| || | ||||| || | | ||| | || |||||||| ||
Sbjct 5725 GAATGC-CATATGAATCTAACGAAGCGAAAAATTTAAATCAACAAATATTTGAAACAATT 5667
Query 76319 TATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA---GGTTCCTATGAG 76375
||| | | | ||||| | || |||||||| || ||| ||| || | ||||||
Sbjct 5666 TATTATGGTGCATTGGAGTCCAGCTGTGAATTAGCAGAA---CAATTGGGACCATATGAG 5610
Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAG-GT 76432
|| | || || | ||| | ||| |||| || | || | ||||||||||| ||| |
Sbjct 5609 ACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATATGTGGGATAAGACT 5550
Query 76433 GAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 76492
||| | | | || ||||| | ||| || ||| || || || |||||
Sbjct 5549 CCCACCGATTT---GTGGGATTGGGAAGCTCTAAAAGAAAAAATTAAAAAGTTTGGTCTC 5493
Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552
|| || || || || ||||||||||| ||||| || || || || || |||||||||
Sbjct 5492 CGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGATTTTGGGTAAT 5433
Query 76553 AATGAATGCTTTGAACCATACACAA 76577
||||| |||||||||| |||||||
Sbjct 5432 AATGAGAGCTTTGAACCTTACACAA 5408
>seq10
Length=552578
Score = 118 bits (130), Expect = 1e-21
Identities = 278/413 (67%), Gaps = 10/413 (2%)
Strand=Plus/Minus
Query 177558 TTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTC 177617
||||||||| | | ||| | | || || || || || | ||| | || || | ||
Sbjct 300737 TTCAACAAATTCTCGTACACTGCGAGTTTCGCCTGTAGCAATTACAAAATCTTCTGGCTG 300678
Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677
|| ||||| | ||| | |||||| ||||| || |||||||| ||||||||||| || |
Sbjct 300677 ATCCTGTTGCAACATCATCCACATAGCTTCCACGTAGTCCTTTGCATGACCCCAATCACG 300618
Query 177678 GGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGAC 177737
| || || ||||| ||||| | ||| ||| | |||| | | | || | |
Sbjct 300617 TTTTGAGTCAAGATTACCAAGTTCCAAGAATTCTTGTTG--CTTTAATGAAATTTTAG-C 300561
Query 177738 GCC--ATCAG-TAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794
| | ||| | |||| ||| |||| || || | | |||| || || ||||| || ||
Sbjct 300560 GACTGATCGGGTAATTTTCCTTGTAACGAAATTTTCTCCTCTCCTTGGCGATTCATGATT 300501
Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854
|| | || || || ||||||||||| || | ||| ||||||||| | | || |||
Sbjct 300500 AAATAAAATACCATTACATGCATACATACCGTAAGCTTCACGGTAATTTATAATGATCCA 300441
Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGA--TCGTGGGTAGAAGGGTGTCTCCTCA 177912
|| | | ||| | || |||| ||| || ||| ||||| ||||||| ||||
Sbjct 300440 GTATCCATAAAGTTTAGCTACTGCATAT--GGACTTCTTGGATAGAATGGTGTCTTCTCA 300383
Query 177913 GTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965
|||||||||||||| ||||| ||| ||| || || || || || || ||
Sbjct 300382 GTTTGTGGAGTTTCCACTACTTTTCCATACAATTCTGATGTAGATGCCTGATA 300330
>seq782
Length=54866
Score = 87.8 bits (96), Expect = 2e-12
Identities = 211/314 (67%), Gaps = 4/314 (1%)
Strand=Plus/Plus
Query 14470 TGCGTACCACCATGGTGAAGTATC-CTTAGCGGACACGATTGTTAAGTTGGCAAACGACT 14528
||| || || ||||||||||| || ||| || | || |||||||| ||||| | | |
Sbjct 42612 TGCATATCATCATGGTGAAGTTTCACTTTGCAGT-ACAATTGTTAATTTGGCTCAAAATT 42670
Query 14529 ACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCA 14588
| || ||||| ||||| | ||| |||| |||||| |||||||||||| | |
Sbjct 42671 ATGTCGGAAGTAACAATATTAATTTGCTTCAACCTAATGGTCAGTTTGGTACGCGTTTAA 42730
Query 14589 TGGGTGGTAAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTAC-CAAGGAGGCT 14647
||| || || ||| || | | | || |||||||| | ||| | | | | |||
Sbjct 42731 CGGGAGGAAAAGATTCTGCAAGTCCTCGTTATATTTTCACGATGCTTTCGCCATTA-GCT 42789
Query 14648 CGCAAGATCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGC 14707
|| | ||||| |||| | ||||| || | || |||| ||||| || || |
Sbjct 42790 CGTCACATCTTCCATCCACATGATGATCCTTTGCTTAACTTTTTGGATGAAGACAATCAG 42849
Query 14708 TCCATTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAG 14767
||||| || || | ||| | |||| | | ||||||||||| || ||||| | ||
Sbjct 42850 CGTATTGAGCCTGAATATTATGTTCCAATTATTCCAATGGTTCTTGTAAATGGCGCTGAA 42909
Query 14768 GGTATCGGTACGGG 14781
||||| ||||| ||
Sbjct 42910 GGTATTGGTACTGG 42923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596375528452000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |