Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq343 161 1e-34 seq10 118 1e-21 seq782 87.8 2e-12 >seq343 Length=103200 Score = 161 bits (178), Expect = 1e-34 Identities = 454/685 (66%), Gaps = 24/685 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| ||||| |||||||| || |||||| | || ||| ||| || ||| || Sbjct 6080 GAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAACCGGAAATCAAATCAACAG 6021 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || ||||| | || ||| | || |||||||| || | || || |||| Sbjct 6020 AATCTTGGGACAATACGTTGTTCGAATTTATGTACGGAAATAGTACAATATTCAAGTAAG 5961 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA- 76083 ||||| || ||||| ||||| |||||||| || | | || |||||| || | Sbjct 5960 GATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTTAAATATGTTTGTCAAACAAAAT 5901 Query 76084 -GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATC 76142 || | | | ||| | | | ||| | | ||| | ||||| || || || | ||| Sbjct 5900 CGAAGAGAA--TATGACTTTCACAAATTGAAGGAAGTTACAAAAATAGTCACAAGGAATT 5843 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGA-GACTGCGCGAAA--GTCTAATA 76199 | || | | ||| || ||||| ||||||||||| || || ||| ||| || Sbjct 5842 TGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAA---GCTAAACGGTCAAACT 5786 Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGC 76258 | |||| | |||||||| | || |||||||| | || |||| ||||||||| || Sbjct 5785 TTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGATGCTTTTATTTTGATGA 5726 Query 76259 CGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATG 76318 | | ||| ||| || | ||||| || | | ||| | || |||||||| || Sbjct 5725 GAATGC-CATATGAATCTAACGAAGCGAAAAATTTAAATCAACAAATATTTGAAACAATT 5667 Query 76319 TATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA---GGTTCCTATGAG 76375 ||| | | | ||||| | || |||||||| || ||| ||| || | |||||| Sbjct 5666 TATTATGGTGCATTGGAGTCCAGCTGTGAATTAGCAGAA---CAATTGGGACCATATGAG 5610 Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAG-GT 76432 || | || || | ||| | ||| |||| || | || | ||||||||||| ||| | Sbjct 5609 ACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATATGTGGGATAAGACT 5550 Query 76433 GAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 76492 ||| | | | || ||||| | ||| || ||| || || || ||||| Sbjct 5549 CCCACCGATTT---GTGGGATTGGGAAGCTCTAAAAGAAAAAATTAAAAAGTTTGGTCTC 5493 Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 || || || || || ||||||||||| ||||| || || || || || ||||||||| Sbjct 5492 CGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGATTTTGGGTAAT 5433 Query 76553 AATGAATGCTTTGAACCATACACAA 76577 ||||| |||||||||| ||||||| Sbjct 5432 AATGAGAGCTTTGAACCTTACACAA 5408 >seq10 Length=552578 Score = 118 bits (130), Expect = 1e-21 Identities = 278/413 (67%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 177558 TTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTC 177617 ||||||||| | | ||| | | || || || || || | ||| | || || | || Sbjct 300737 TTCAACAAATTCTCGTACACTGCGAGTTTCGCCTGTAGCAATTACAAAATCTTCTGGCTG 300678 Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677 || ||||| | ||| | |||||| ||||| || |||||||| ||||||||||| || | Sbjct 300677 ATCCTGTTGCAACATCATCCACATAGCTTCCACGTAGTCCTTTGCATGACCCCAATCACG 300618 Query 177678 GGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGAC 177737 | || || ||||| ||||| | ||| ||| | |||| | | | || | | Sbjct 300617 TTTTGAGTCAAGATTACCAAGTTCCAAGAATTCTTGTTG--CTTTAATGAAATTTTAG-C 300561 Query 177738 GCC--ATCAG-TAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794 | | ||| | |||| ||| |||| || || | | |||| || || ||||| || || Sbjct 300560 GACTGATCGGGTAATTTTCCTTGTAACGAAATTTTCTCCTCTCCTTGGCGATTCATGATT 300501 Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854 || | || || || ||||||||||| || | ||| ||||||||| | | || ||| Sbjct 300500 AAATAAAATACCATTACATGCATACATACCGTAAGCTTCACGGTAATTTATAATGATCCA 300441 Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGA--TCGTGGGTAGAAGGGTGTCTCCTCA 177912 || | | ||| | || |||| ||| || ||| ||||| ||||||| |||| Sbjct 300440 GTATCCATAAAGTTTAGCTACTGCATAT--GGACTTCTTGGATAGAATGGTGTCTTCTCA 300383 Query 177913 GTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 |||||||||||||| ||||| ||| ||| || || || || || || || Sbjct 300382 GTTTGTGGAGTTTCCACTACTTTTCCATACAATTCTGATGTAGATGCCTGATA 300330 >seq782 Length=54866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 211/314 (67%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 14470 TGCGTACCACCATGGTGAAGTATC-CTTAGCGGACACGATTGTTAAGTTGGCAAACGACT 14528 ||| || || ||||||||||| || ||| || | || |||||||| ||||| | | | Sbjct 42612 TGCATATCATCATGGTGAAGTTTCACTTTGCAGT-ACAATTGTTAATTTGGCTCAAAATT 42670 Query 14529 ACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCA 14588 | || ||||| ||||| | ||| |||| |||||| |||||||||||| | | Sbjct 42671 ATGTCGGAAGTAACAATATTAATTTGCTTCAACCTAATGGTCAGTTTGGTACGCGTTTAA 42730 Query 14589 TGGGTGGTAAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTAC-CAAGGAGGCT 14647 ||| || || ||| || | | | || |||||||| | ||| | | | | ||| Sbjct 42731 CGGGAGGAAAAGATTCTGCAAGTCCTCGTTATATTTTCACGATGCTTTCGCCATTA-GCT 42789 Query 14648 CGCAAGATCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGC 14707 || | ||||| |||| | ||||| || | || |||| ||||| || || | Sbjct 42790 CGTCACATCTTCCATCCACATGATGATCCTTTGCTTAACTTTTTGGATGAAGACAATCAG 42849 Query 14708 TCCATTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAG 14767 ||||| || || | ||| | |||| | | ||||||||||| || ||||| | || Sbjct 42850 CGTATTGAGCCTGAATATTATGTTCCAATTATTCCAATGGTTCTTGTAAATGGCGCTGAA 42909 Query 14768 GGTATCGGTACGGG 14781 ||||| ||||| || Sbjct 42910 GGTATTGGTACTGG 42923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596375528452000