Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq296 140 6e-28 seq442 118 2e-21 seq17255 113 8e-20 >seq296 Length=113092 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||||||||| ||||| ||||| |||||| || || | | | Sbjct 112869 CGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCA 112928 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| || || || || | |||||| || || || ||||||||||| Sbjct 112929 TCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTG 112988 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||| || || || | ||||||||||| || || Sbjct 112989 TCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATG 113048 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| | || || || || |||||||| Sbjct 113049 GTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq442 Length=86436 Score = 118 bits (130), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 193163 TGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCC 193222 ||| | |||||| || || |||||| || || | | ||| |||||||||||||| Sbjct 25019 TGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCATCTTCTAATTGTTTTCC 25078 Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 ||||| || || | ||||||||| || || |||||||| |||||||| || || | || Sbjct 25079 AGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTAGCCTT 25138 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | |||| ||| || || || | ||| ||||| || || || || ||||| || | || Sbjct 25139 GACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGT 25198 Query 193343 TTTTACAAATATTTGCAT--TTTAT-TAGTAAAATA 193375 ||| || || || ||||| | ||| ||| |||||| Sbjct 25199 TTTGACGAAGATCTGCATGGTGTATCTAGAAAAATA 25234 >seq17255 Length=1118 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 || || || | |||||| || || || |||||||| |||||||| ||||| | |||| | Sbjct 1 AAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACA 60 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| ||||||||| || | ||||||||| | || ||||||||||| |||| ||||| Sbjct 61 TTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTA 120 Query 193347 ACAAATATTTGCATT 193361 || || ||||||||| Sbjct 121 ACGAAAATTTGCATT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899361731178000