Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq119 237 2e-57 seq17255 107 3e-18 seq205 86.0 9e-12 seq10680 84.2 3e-11 >seq119 Length=197918 Score = 237 bits (262), Expect = 2e-57 Identities = 556/837 (66%), Gaps = 10/837 (1%) Strand=Plus/Plus Query 17862 CTTTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || ||||| ||||| || || ||| |||||||| |||||||| || || | ||| || Sbjct 167155 CTCTTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATA 167214 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 || | |||||| |||||||| |||| ||||| ||| || || ||||| Sbjct 167215 AATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCC 167274 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||| ||| || |||||||| | || || | ||| ||||| |||||||| || | Sbjct 167275 AATAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAAC 167334 Query 18041 AGTCTGAAA-GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 | ||| || || || || ||| | | |||||| ||||| || | |||| |||| | || Sbjct 167335 A-TCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGAT 167393 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTAT--TAATTATGTGATTATAATATAATAAA 18157 || | | ||| || ||||| || | | | |||| | || | ||| Sbjct 167394 AATTTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGT-----TTGTACATTAAG 167448 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| || | ||||| ||||| || || | ||| || ||| || ||| Sbjct 167449 CATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAAC 167508 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| ||||| || || | ||||||||| | ||| || |||| | |||||| Sbjct 167509 CCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAA 167568 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || || || || || || | || |||| |||| | || ||||| | Sbjct 167569 ATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGAT 167628 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||| ||| ||||| || | | | ||| || | |||| || ||||| Sbjct 167629 ATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTG 167688 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || || || | || | |||| | |||||||| || ||||| | || ||||| Sbjct 167689 AATAAGAAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATC 167748 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 || || |||| |||||||||| || || || | ||| || ||| ||| || ||| | Sbjct 167749 TCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACT 167808 Query 18518 TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577 |||| || | || | || | ||||||||||| || || || |||| | || Sbjct 167809 TGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCA 167868 Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCA 18637 || || || || |||| || ||||| || |||||||||||||||||| || Sbjct 167869 AAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCT 167928 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 || ||||||||||||| ||| ||||| || |||||| || | ||| |||||| Sbjct 167929 TCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAAGCTGGCTTCAGCCTGT 167985 >seq17255 Length=1118 Score = 107 bits (118), Expect = 3e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||||||||| ||||| ||||||||||| || ||||| || || Sbjct 135 AATGCAAATTTTCGTTAAAACATTAACTGGTAAAACTATTACCTTGGAAGTTGAGCCATC 76 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| || || |||||| |||||||| ||||| || || ||||| || Sbjct 75 TGATACTATTGAAAATGTAAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCA 16 Query 155942 ACAAAGATTGAT 155953 ||| | ||||| Sbjct 15 ACAGCGTTTGAT 4 >seq205 Length=143123 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 17862 CTTTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 |||| ||| |||||||| |||||| ||||||||||||||| | || || | ||| ||| Sbjct 86564 CTTTCTTGATATTCTCCAACTTTTCGCTCGAAGAAATTTGTTTCACCCTCGAGTGAAATT 86505 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | | |||||| |||||||| | || ||||| || ||| | ||||||| Sbjct 86504 AGTTCCATAAATGAGAATGGATTTTTAGTACTATAAATCTTCTCTAATCTTAATTCACCC 86445 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 || || ||||| |||||| || | ||| ||||| || |||||||||| ||||| Sbjct 86444 AACAAGTGATCTGTTACAAA-TCTATATA----GACATTAATTCGCAATTCAATCCTAG 86391 >seq10680 Length=1285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| || || ||||| ||||||||| ||| Sbjct 1170 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACATTGGAAGTCGAACCATCT 1229 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 || | || ||| || || |||||| |||||||||||||| || || ||||| Sbjct 1230 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGA 1285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731633912890000