Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq119 284 2e-71 seq442 136 8e-27 seq296 122 2e-22 seq17255 113 9e-20 >seq119 Length=197918 Score = 284 bits (314), Expect = 2e-71 Identities = 521/766 (68%), Gaps = 16/766 (2%) Strand=Plus/Plus Query 49586 TAAATTCATAAAATCA-AATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACAT 49644 ||||||| |||| | |||||||||||||||||||| ||| || | |||| || Sbjct 167213 TAAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCAC 167272 Query 49645 ATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCA 49704 ||||| ||| || |||||||| | || || | |||||| ||||||||||| |||| Sbjct 167273 CCAATAAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCA 167332 Query 49705 ATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaa 49764 | | |||| ||| | ||| ||| | |||||| || || |||| |||||| | | | | Sbjct 167333 ACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGA 167392 Query 49765 ttatcataattatattattttttgataatttatatttaatatgattcgcatatattaaAC 49824 | || || || | | |||| | || | || || ||| || || ||||| | Sbjct 167393 TAATTTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTTG---TACATTAAGC 167449 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 ||||||| ||| ||| | || ||||| || || |||| |||||| ||| || || | Sbjct 167450 ATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACC 167509 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 ||||||||||||||||||| |||| ||||||||| | |||||| |||| | |||||| | Sbjct 167510 CTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAA 167569 Query 49945 TACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA 50004 | || |||||| ||||| || || | || | | ||||| || || | ||| Sbjct 167570 TCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATA 167629 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 ||||||||| |||||| || || || || || | | | || | | || || || || | Sbjct 167630 TCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGA 167689 Query 50065 AT---AATTCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAAT 50118 || || ||| | ||| ||| ||||||| || | Sbjct 167690 ATAAGAAGTCACGCTGCTTTGCAT------CTCTAATATAAGTTTCAATTAATATTGAGT 167743 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 |||| || || |||||| ||||||||| ||||| ||| ||| || || ||||||| Sbjct 167744 ACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTG 167803 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 | |||||||| | ||| || |||| |||||||||| ||| || |||||||||| Sbjct 167804 GAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATG 167863 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 50298 | || ||||| ||||| || | |||||||| || ||| || | ||| | || Sbjct 167864 CAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCC 167923 Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 | ||| | ||| ||||||||||| ||||| || | |||||| || Sbjct 167924 AGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 >seq442 Length=86436 Score = 136 bits (150), Expect = 8e-27 Identities = 178/244 (73%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || || ||||| || | || | |||||| ||| || || || Sbjct 24989 ACCACCACGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCT 25048 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| || |||| || |||||||| ||||||||||| || | ||||||||| ||||| Sbjct 25049 CAATGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 25108 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||||||| || ||| || ||||| || | || || | || || Sbjct 25109 AATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGAC 25168 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT--TTTAT-TAGA 192545 ||| || ||||| || ||||| || || ||||| | || |||||||| | ||| |||| Sbjct 25169 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGTGTATCTAGA 25228 Query 192546 AAAA 192549 |||| Sbjct 25229 AAAA 25232 >seq296 Length=113092 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || ||||| || |||| ||||| |||||| || || Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| ||||||||||| || || ||||| || | |||||| || ||||| Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| ||||| || || |||||||| || | ||||| | || ||| Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || |||||||| || || || || || | || || ||||| Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq17255 Length=1118 Score = 113 bits (124), Expect = 9e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 192403 AAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACA 192462 ||||| || | |||||| || ||||| |||||||| |||||||| |||||| |||||| Sbjct 1 AAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACA 60 Query 192463 TTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTA 192522 || |||| ||| || | || ||||| | ||||| ||||||||||||||||||||| Sbjct 61 TTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTA 120 Query 192523 ATAAATATCTGCATT 192537 | || || |||||| Sbjct 121 ACGAAAATTTGCATT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984151729758750