Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq119 264 2e-65 seq17255 122 2e-22 seq296 107 3e-18 >seq119 Length=197918 Score = 264 bits (292), Expect = 2e-65 Identities = 540/815 (66%), Gaps = 3/815 (0%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| |||||| ||| ||| |||||| |||||||| || || || | ||| || || Sbjct 167158 TTTTGATATTCACCAACCTTTCGTTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAAT 167217 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 | |||||| |||||||||||||||||||| ||| || | |||| || ||| Sbjct 167218 TCCATAAATGAGAATGGATTTTTGGTATTATAGACTTTATCAAGTCCCAATTCACCCAAT 167277 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 || ||| || |||||||| | || || |||||| ||||||||||| ||||| | Sbjct 167278 AAATGATCAGCAACAAATTCTATGTACTGAGTCATTAAATCACAATTCATGCCCAACATC 167337 Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071 |||| ||| | ||| ||| | |||||| || || |||| |||||| | | | || || Sbjct 167338 TTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATT 167397 Query 39072 ataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCA 39131 || || | | |||| | || | || || ||| || || | ||| |||||| Sbjct 167398 TCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATGTTT---GTACATTAAGCATGCA 167454 Query 39132 AAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 39191 || || ||| | |||||||| || || |||| |||||| ||| || || |||||| Sbjct 167455 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGC 167514 Query 39192 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 39251 |||||||||||||| |||| ||||||||| | |||||| |||| | |||||| || || Sbjct 167515 ATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCT 167574 Query 39252 TCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAA 39311 || ||| ||||| || || | || | | ||||| || || | | |||||| Sbjct 167575 TCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGCATTCTTGCTGGATATCCAA 167634 Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371 |||| ||||| || || || || || | | | || | | || || || || ||||| Sbjct 167635 TTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAG 167694 Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431 | || ||||| || || Sbjct 167695 AAGTCACGCTGCTTTGCATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAG 167754 Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491 |||||| ||||||||| ||||| ||| ||| || | ||||||| | |||||| Sbjct 167755 TGTACATTTTCCATAGCAATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACT 167814 Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551 || | ||| || |||| |||||||||| ||| || ||||||||||| || ||||| Sbjct 167815 TCCTGACTGAAACGCTCAATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAAA 167874 Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611 ||||| |||| |||||||| || ||| || | ||| | ||| ||| | | Sbjct 167875 GCTAATACATGCGAGATAAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCTTCCATA 167934 Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 39646 || ||||||||||| ||||| || | |||||| || Sbjct 167935 TCTTTTGATAAATCGACTTCCTCGACTGTCCAGAA 167969 >seq17255 Length=1118 Score = 122 bits (134), Expect = 2e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 171936 AAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACA 171995 || || || | ||||||||| ||||| |||||||| |||||||| |||||| |||||| Sbjct 1 AAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACA 60 Query 171996 TTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTA 172055 || |||||||| || | || ||||| | ||||| ||||||||||||||||||||| Sbjct 61 TTTTCAATAGTATCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTA 120 Query 172056 ATGAATATCTGCATT 172070 | ||| || |||||| Sbjct 121 ACGAAAATTTGCATT 135 >seq296 Length=113092 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | || ||||| || |||| ||||| ||||| || || Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || ||||||||||| || || || || || | ||||||||| ||||| Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| ||||| || || |||||||| || || ||||| | || ||| Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || |||||||| || || || || || | ||| || ||||| Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904841547945000