Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq343 131 5e-25 seq119 131 5e-25 seq506 122 3e-22 >seq343 Length=103200 Score = 131 bits (144), Expect = 5e-25 Identities = 209/299 (70%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| || || ||||| || || || |||||| | || | || ||| |||| || Sbjct 6403 TTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGG 6462 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||| | ||||| || || |||| | || || |||| ||||| | Sbjct 6463 CCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACA 6522 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | ||||| ||||||| |||| ||| ||||||| |||| |||| || Sbjct 6523 TTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAA 6582 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||| ||||||||||||||| ||||||||||| |||| || ||||||||| ||| Sbjct 6583 ATACCCTCAATAGAATCATCTGACATTGATAGTAAGAAGCATGAGGATAATTGAGGGCGT 6642 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358 || ||| |||| ||||| || || | |||||| ||||| || | ||| | ||||| Sbjct 6643 GGCGTTGCAGCTGCGAATAAAGTTGGAGATGCATGCGTAAAAAACCT-TTAAAAATATA 6700 >seq119 Length=197918 Score = 131 bits (144), Expect = 5e-25 Identities = 302/442 (68%), Gaps = 16/442 (4%) Strand=Plus/Minus Query 133211 CATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA 133269 |||||||| || ||| | ||||| || |||||||| |||||| || || ||| || Sbjct 167897 CATTTTATCTCGCATG-TATTAGCTTTCTTTGCTGCATCTGATGGCATCGTAAATGAGAA 167839 Query 133270 TTTAG--GAACACGGTTTATGGGAG-AAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGG 133326 |||| || | |||| | || |||||||| | | ||||| || ||| ||||| Sbjct 167838 TTTAATTGAGC---GTTTCAGTCAGGAAGTTCAAGTTCCAGAAGCTCGATTCTTCTATGG 167782 Query 133327 GCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTA 133386 | || ||||| ||||||||| | || || | || || | ||||||| ||||| Sbjct 167781 ATTCCAAATTGCTATGGAAAATGTACACTCGGAGATGTACTCAATATTAATTGAAACTTA 167722 Query 133387 CATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTA 133445 || | |||| | ||| || ||||||| || ||| | || | |||| ||| Sbjct 167721 TATTAGAGATGCAAAGCAGCGTGACTTCTTATTCAATGCAATT-GAGACACTTCCATGTG 167663 Query 133446 TTAAAAAGAAATCTGACTGGGCTATTAAATGGAT--CCAGGACAAGCGTGCGAGTTTTGC 133503 |||| ||||| ||||||||||| | || ||||| |||| |||| ||| | |||| Sbjct 167662 TTAAGAAGAAGGCTGACTGGGCTTTAAATTGGATATCCAG--CAAGAATGCAAACTTTGG 167605 Query 133504 TACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT- 133562 | || | |||||||||| | || || || ||||| || |||||| || ||| Sbjct 167604 TGAACGAGTTATTGCTTTTGCAGCTGTCGAAGGGATTTTCTTTAGTGGTAGCTT-TGCAG 167546 Query 133563 CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTA 133622 |||| |||||| |||| ||| | || | | || || || ||||| || ||||||| Sbjct 167545 CTATATTTTGGATTAAGAAGAGAGGATTAATGCCAGGGTTGACATTTTCAAATGAACTTA 167486 Query 133623 TTTCAAGGGACGAGGCACTTCA 133644 |||| || ||||| | |||||| Sbjct 167485 TTTCGAGAGACGAAGGACTTCA 167464 >seq506 Length=79393 Score = 122 bits (134), Expect = 3e-22 Identities = 214/309 (69%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || ||||||| | ||||| |||||| ||||| |||||||| Sbjct 26016 ATTTCTTACAGTTCCATCATAATGTACCATAACAGACTCCATAGCTTTGATCAAACGACG 26075 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || |||||||||||| || |||||||||||| |||||||| ||||| ||||||| || Sbjct 26076 TTGGATATAACCAGTTTCAGCTGTTTTTACAGCAGTATCAATAAGACCTTCACGACCTCC 26135 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| ||||| | | || || | || ||| | | || |||| ||||| Sbjct 26136 CATAGCGTGGAAATAAAATTCGGAAGGAGTCAATCCGGCAAGATATGAATTCTCGACGAA 26195 Query 302718 ACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 ||||| | || || || ||||||| ||| |||| ||||||| || | || Sbjct 26196 GCCACGAGATTCAGGACCGTAATCGTC---TTTGATAAAATGTGGCAATGTTCGTTTACG 26252 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | ||| | || || || || || |||||||| || || || | || | ||| | ||| Sbjct 26253 AAAACCGAAAGGAATTCGTTTACCTTCAACGTTTTGTTGACCGACACAAGCAATAACCTG 26312 Query 302835 CGAAATATT 302843 || || || Sbjct 26313 TGAGATGTT 26321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471326829320425