Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq343 131 5e-25
seq119 131 5e-25
seq506 122 3e-22
>seq343
Length=103200
Score = 131 bits (144), Expect = 5e-25
Identities = 209/299 (70%), Gaps = 1/299 (0%)
Strand=Plus/Plus
Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119
|| ||||| || || ||||| || || || |||||| | || | || ||| |||| ||
Sbjct 6403 TTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATACTCTTAACATTGGAACAAGG 6462
Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179
||||| ||| | ||||| || || |||| | || || |||| ||||| |
Sbjct 6463 CCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACA 6522
Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239
| | ||||| ||||||| |||| ||| ||||||| |||| |||| ||
Sbjct 6523 TTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGCATTGTTTTAATGTATCATAA 6582
Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299
||||| ||||||||||||||| ||||||||||| |||| || ||||||||| |||
Sbjct 6583 ATACCCTCAATAGAATCATCTGACATTGATAGTAAGAAGCATGAGGATAATTGAGGGCGT 6642
Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358
|| ||| |||| ||||| || || | |||||| ||||| || | ||| | |||||
Sbjct 6643 GGCGTTGCAGCTGCGAATAAAGTTGGAGATGCATGCGTAAAAAACCT-TTAAAAATATA 6700
>seq119
Length=197918
Score = 131 bits (144), Expect = 5e-25
Identities = 302/442 (68%), Gaps = 16/442 (4%)
Strand=Plus/Minus
Query 133211 CATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA 133269
|||||||| || ||| | ||||| || |||||||| |||||| || || ||| ||
Sbjct 167897 CATTTTATCTCGCATG-TATTAGCTTTCTTTGCTGCATCTGATGGCATCGTAAATGAGAA 167839
Query 133270 TTTAG--GAACACGGTTTATGGGAG-AAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGG 133326
|||| || | |||| | || |||||||| | | ||||| || ||| |||||
Sbjct 167838 TTTAATTGAGC---GTTTCAGTCAGGAAGTTCAAGTTCCAGAAGCTCGATTCTTCTATGG 167782
Query 133327 GCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTA 133386
| || ||||| ||||||||| | || || | || || | ||||||| |||||
Sbjct 167781 ATTCCAAATTGCTATGGAAAATGTACACTCGGAGATGTACTCAATATTAATTGAAACTTA 167722
Query 133387 CATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTA 133445
|| | |||| | ||| || ||||||| || ||| | || | |||| |||
Sbjct 167721 TATTAGAGATGCAAAGCAGCGTGACTTCTTATTCAATGCAATT-GAGACACTTCCATGTG 167663
Query 133446 TTAAAAAGAAATCTGACTGGGCTATTAAATGGAT--CCAGGACAAGCGTGCGAGTTTTGC 133503
|||| ||||| ||||||||||| | || ||||| |||| |||| ||| | ||||
Sbjct 167662 TTAAGAAGAAGGCTGACTGGGCTTTAAATTGGATATCCAG--CAAGAATGCAAACTTTGG 167605
Query 133504 TACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT- 133562
| || | |||||||||| | || || || ||||| || |||||| || |||
Sbjct 167604 TGAACGAGTTATTGCTTTTGCAGCTGTCGAAGGGATTTTCTTTAGTGGTAGCTT-TGCAG 167546
Query 133563 CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTA 133622
|||| |||||| |||| ||| | || | | || || || ||||| || |||||||
Sbjct 167545 CTATATTTTGGATTAAGAAGAGAGGATTAATGCCAGGGTTGACATTTTCAAATGAACTTA 167486
Query 133623 TTTCAAGGGACGAGGCACTTCA 133644
|||| || ||||| | ||||||
Sbjct 167485 TTTCGAGAGACGAAGGACTTCA 167464
>seq506
Length=79393
Score = 122 bits (134), Expect = 3e-22
Identities = 214/309 (69%), Gaps = 6/309 (2%)
Strand=Plus/Plus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
||||||||| || ||||||| | ||||| |||||| ||||| ||||||||
Sbjct 26016 ATTTCTTACAGTTCCATCATAATGTACCATAACAGACTCCATAGCTTTGATCAAACGACG 26075
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
|| |||||||||||| || |||||||||||| |||||||| ||||| ||||||| ||
Sbjct 26076 TTGGATATAACCAGTTTCAGCTGTTTTTACAGCAGTATCAATAAGACCTTCACGACCTCC 26135
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
|||||| ||||| | | || || | || ||| | | || |||| |||||
Sbjct 26136 CATAGCGTGGAAATAAAATTCGGAAGGAGTCAATCCGGCAAGATATGAATTCTCGACGAA 26195
Query 302718 ACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774
||||| | || || || ||||||| ||| |||| ||||||| || | ||
Sbjct 26196 GCCACGAGATTCAGGACCGTAATCGTC---TTTGATAAAATGTGGCAATGTTCGTTTACG 26252
Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834
| | ||| | || || || || || |||||||| || || || | || | ||| | |||
Sbjct 26253 AAAACCGAAAGGAATTCGTTTACCTTCAACGTTTTGTTGACCGACACAAGCAATAACCTG 26312
Query 302835 CGAAATATT 302843
|| || ||
Sbjct 26313 TGAGATGTT 26321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471326829320425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |