Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq343 181 1e-40 seq442 132 4e-26 seq296 109 5e-19 seq17255 93.3 4e-14 >seq343 Length=103200 Score = 181 bits (200), Expect = 1e-40 Identities = 936/1477 (63%), Gaps = 56/1477 (4%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| || |||||||||| || |||| || || ||||| |||| | ||||||||||| Sbjct 5010 TTTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCC 5069 Query 138213 CGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCG 138271 ||||| | |||||||||| | |||| | || || || || | | | | ||| | | Sbjct 5070 AGTTTTCAGTCCCATTTTCC-ATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGG 5128 Query 138272 GTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 ||| || | | || |||||||| ||||| || || || ||||| || ||||| | Sbjct 5129 GTTCAGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAG 5188 Query 138332 CCATGTTAATTAAATTTTTACTTTTC----ATCTCCCACACGGTCTTGTATAGATCACGA 138387 ||| | |||| | | ||| | || ||||| || || || |||| || Sbjct 5189 ACATTTGAATT----TGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTT 5244 Query 138388 ATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTT 138447 |||| || ||| ||||| | || || || || ||||| || || Sbjct 5245 ATATCATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTC 5304 Query 138448 CTCATGTCATCGTTGTACAGATTCAACTTGA-TCAAGTCGTTTATCAGATATCTGTTTAT 138506 |||| || || | | | | || || | |||| || || || |||| || | Sbjct 5305 TTCATATCGTCATCCCATAAAC-CACGTTCAGTCAAATCCTTGATAAGATGGTGATTAAC 5363 Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566 || ||||||||||| | || |||||| |||| || | ||| |||| ||||| Sbjct 5364 AACTTGAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAAA 5423 Query 138567 CGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAG 138626 || || || |||| ||||||||| || | || |||||||| || | || || Sbjct 5424 GCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAG 5483 Query 138627 AGAATTCCGTAAACCGTGAAGC---TTGATTCGTTCCTTGAGCGACGACCAGTCCCACAA 138683 ||||| || | ||| || | || ||| ||| || || | ||| |||||||| Sbjct 5484 TGAATTTCGGAGACC---AAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAA 5540 Query 138684 ATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTG---CGGGACT 138740 |||| | || | || | ||||||||| || ||||| | || ||| | |||| Sbjct 5541 ATCGGTGGGAGTCTTATCCCACATATCATATTGTAATACACC---TTTTGACACCGGACA 5597 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 || ||||| | || ||| || || | || || || || ||| | ||| | || Sbjct 5598 TCCATCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGC 5657 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 |||||| ||||| ||||| || || ||||| | | || ||| || || Sbjct 5658 ACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCATA 5717 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 ||||| | | || | || || || |||| ||||| || || | ||| | ||| || Sbjct 5718 TGGCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACG 5777 Query 138921 ATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTT 138980 ||| | | |||||| ||| || |||| | ||||| || ||||| | || ||||| Sbjct 5778 ATGTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTT 5837 Query 138981 GTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCC 139040 || ||||| | ||| | || || | ||| ||| | ||| || ||| | | Sbjct 5838 ATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATAT-TCTC 5896 Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACAC 139100 || | | || | |||||| | || | | ||| || |||| || || || Sbjct 5897 TTCGATTTTGT--------TTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAAC 5948 Query 139101 CGCCACTTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 || ||||| || | || |||| || ||||| | ||| ||||| ||| Sbjct 5949 TGCAACTTCATC--CTTACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGT 6006 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || || || | ||| |||||||| ||| ||||| || | ||| || || |||||||| Sbjct 6007 ATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATAA 6066 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGA---ACAAGTCCCTAGCTTGT 139275 ||||| |||||||| ||||| | ||| ||||| | || |||| || || | | Sbjct 6067 GGTGTACCAGTTTCTACTTGAGCCTC---AATGATTGCGAACCACAAATCTTGTGCCTTT 6123 Query 139276 ATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 | |||||| | || | | || || || ||| || |||| | ||| ||| Sbjct 6124 ACTTGACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCA 6183 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 ||||| | ||| ||||| || ||| | | ||||||||| | ||||| | | || Sbjct 6184 CCGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAATGACCACATTTCATTG 6243 Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC--GC- 139452 | || || | |||||||| ||| ||||||||||| || | | || || | || Sbjct 6244 TTTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCT 6303 Query 139453 --GCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 | |||||| | |||| || || | || | | || || ||||||| ||| Sbjct 6304 CTGACTTCTTCTTTTCC---AGTATTTTTC--TTTAAATCCAGAAATTCAAAAATATCAC 6358 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT---TTGCCACCTTGATCGA 139567 | ||||| ||||||| ||| || || | |||||| ||| || |||||||| || | Sbjct 6359 CATGCCAAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAA 6418 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 | | ||| | | ||||||| |||| | ||||| || Sbjct 6419 CATAACGTGCGGTATTATTGTATACTCTTAACATTGG 6455 >seq442 Length=86436 Score = 132 bits (146), Expect = 4e-26 Identities = 166/222 (75%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| | || ||||| || ||||| |||||||| || ||| Sbjct 25219 ACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GCC 25161 Query 24761 ACC-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | ||||| | |||| || || ||||| ||||| || |||||||| || || || Sbjct 25160 ATCTGACACGATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCAGA 25101 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGA 24876 |||||| |||||||||||||| || ||||| | || ||| ||| ||| || || Sbjct 25100 TCAACAGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCG---TACATTGAGCGA 25044 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 25043 CTACAACATCCAAAAAGAGTCAACACTTCACTTAGTGTTGCG 25002 >seq296 Length=113092 Score = 109 bits (120), Expect = 5e-19 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || || ||||| || || | ||||| || |||| | Sbjct 113083 ATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGA-GCCATC 113025 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| ||||| |||||||||||||||||||||||| || || || || Sbjct 113024 AGACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCA 112965 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTA 24879 ||| ||||||||||| || || ||||| |||| ||| ||| ||| || || || Sbjct 112964 ACAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCG---TACATTGAGCGACTA 112908 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| ||| | || ||||| | || | || ||||| Sbjct 112907 CAATATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG 112857 >seq17255 Length=1118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| |||| |||||||||||||| | ||||| || |||| | Sbjct 134 ATGCAAATTTTCGTTAAAACATTAACTGGTAAAACTATTACCTTGGAAGTTGA-GCCATC 76 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| ||||| || |||||||| || |||||||| || || || || Sbjct 75 TGATACTATTGAAAATGTAAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCA 16 Query 24823 ACAACGTTTGATCTT 24837 ||| ||||||||||| Sbjct 15 ACAGCGTTTGATCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449751242687000