Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq296 116 6e-21 seq1066 113 7e-20 seq442 102 1e-16 seq17255 93.3 7e-14 >seq296 Length=113092 Score = 116 bits (128), Expect = 6e-21 Identities = 175/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | || || || ||||||||||| || || | || || || ||| | Sbjct 113082 TGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATCA- 113024 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||||||||| || || ||| |||||||| |||||||| || ||| Sbjct 113023 GACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 112964 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || || ||||| |||||||| || ||| | | || || | || || ||| Sbjct 112963 CAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAAT 112904 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTG 146270 || || |||||||| || | ||||| || | || | | ||||| |||| ||| ||| Sbjct 112903 ATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG-AAATTAATTTTG 112845 Query 146271 AAAAT 146275 ||||| Sbjct 112844 AAAAT 112840 >seq1066 Length=41063 Score = 113 bits (124), Expect = 7e-20 Identities = 232/343 (68%), Gaps = 13/343 (4%) Strand=Plus/Minus Query 96742 AAGCATCCATTACAACATGCATGGTCATTATGGTATAATGGTAATGATGCACATAAGTCC 96801 || ||||||||||||||| | ||| |||| |||||| ||| ||| | ||||| Sbjct 29641 AAACATCCATTACAACATTCGTGGACATTGTGGTATTATGAGCCAGATCGTAACAAGTCA 29582 Query 96802 TGGGATGAGAATTT--ACAATTTGTATATTCTTTTAATACAATAGAAGATTTCTGGTGTG 96859 ||||| || ||| |||| ||| | | ||||||||| | |||||||||||| | Sbjct 29581 TGGGAAGATAATCAGAACAAAGTGTCGA--CATTTAATACAGTTGAAGATTTCTGGAGCT 29524 Query 96860 TATATAATTATATAAAATTACCTACTGAATTAAATAATGGAACAGATTATTTATTATTTA 96919 ||| || | | ||||| ||| | ||| | || | ||||| || || | |||| | Sbjct 29523 TATTTACTCACATAAAGCAACCGAGCGAAGTTAAAATTGGAAGTGACTACTCTCTATTCA 29464 Query 96920 AGAAACATATTAAACCTAGATGGGAAGATAAATCTAATATTAATGGTGGAAAATGGATAA 96979 || | |||||| |||| |||||||||||| | || | ||||||||| ||||| | Sbjct 29463 AGGAGCATATTCGTCCTATGTGGGAAGATAAAGCAAACAAGAATGGTGGACGCTGGATGA 29404 Query 96980 TTAATT----CAATACATAAAGTCATCAATGATGTC-----TGGTTAGATATAGTATTAT 97030 | | || || | || ||| ||| | || ||| | |||| ||| || | Sbjct 29403 TAACTTTAGCTAAGAATCAACGTCCCGAATTAGATCGCTATTGGATTGATACAGTTTTGT 29344 Query 97031 GTTTAATAGGAGAAACATTGGATAGTTCAAATAATATATGTGG 97073 | ||||| || ||| |||| ||||||| || |||| ||||| Sbjct 29343 GCTTAATCGGTGAAGCATTTGATAGTTTTGATGATATTTGTGG 29301 >seq442 Length=86436 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || || || |||||||| | || || || | | Sbjct 25215 TGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGAGCCATCTG 25156 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || ||| || ||| ||| ||||| |||||||| ||||||| Sbjct 25155 ACACGATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCAGATCAAC 25096 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || ||||||||||| ||| | | || || | || || || | Sbjct 25095 AGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACATTGAGCGACTACAACA 25036 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | |||||||| || || | || ||||| || || Sbjct 25035 TCCAAAAAGAGTCAACACTTCACTTAGTGTTGCG 25002 >seq17255 Length=1118 Score = 93.3 bits (102), Expect = 7e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||||||||| || ||||| ||||| | || || || | | Sbjct 133 TGCAAATTTTCGTTAAAACATTAACTGGTAAAACTATTACCTTGGAAGTTGAGCCATCTG 74 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||||||||| |||||| ||| ||| ||||| |||||||| || |||| Sbjct 73 ATACTATTGAAAATGTAAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAAC 14 Query 146152 A 146152 | Sbjct 13 A 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785910650243000