Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq767 123 3e-23 >seq767 Length=55330 Score = 123 bits (136), Expect = 3e-23 Identities = 315/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 180507 GTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGAC 180566 || ||||| | || | ||| | | || |||||| ||| ||| |||||||| || | Sbjct 37528 GTACGCGTGAATTCCTTGATGCATCCGGTTTTCATGATCGTCAAGTTGGTGATTTGGGTC 37587 Query 180567 CAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACCAACT 180626 || ||||||||||||| ||| ||||| || || |||||| || ||| | | Sbjct 37588 CAGTTTATGGATTTCAGTGGCGACATTTTGGTGCCAAATATAAAACATGCGATGATGAAT 37647 Query 180627 ATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCG 180686 || || ||||| || |||||||||| | || || ||| || ||| ||||| Sbjct 37648 ATGAAGGCCAAGGAATTGACCAATTAAAGGATGTCATTGAACGCATCAAAGCCAATCCA- 37706 Query 180687 AATGC-CGAAGAATAATCATAGATAGT-TGGAATGTATCACAATTACCAGATATGGCTCT 180744 |||| || | || || || || | |||||| | | | ||| | ||||| || Sbjct 37707 AATGATCGTCGTATTAT-ATTGAGCGCATGGAATCCAGTGGACATTCCACAAATGGCACT 37765 Query 180745 TCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCA 180804 |||||||||||||||| | || ||||||||||| ||| | ||| || ||||| Sbjct 37766 TCCACCATGTCACTGTCTCGTTCAATTTTATGTCGCTAAT--GGTGAATTGAG-CTGCCA 37822 Query 180805 ATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTC 180864 ||| || |||||||| || ||| | || | || || || | |||||||| | ||| | Sbjct 37823 ATTATACCAAAGATCAGCTGATATGGGTCTTGGAGTTCCTTTCAATATTGCATCGTATGC 37882 Query 180865 ATTTTTG--GTATGTGTTCTCTCAAAGTGGTGC-AATTTAACCCCTGGAAAATTTATTCA 180921 || ||| ||| || | |||| || | | ||||| | ||||| | ||| |||| Sbjct 37883 CTTATTGACGTACATGATTGCTCA---TGTTACAAATTTGAAGCCTGGTGATTTTGTTCA 37939 Query 180922 CACTTTTGGGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAA 180970 |||||||| |||| |||| | || | || || | ||| | ||| ||| Sbjct 37940 TACTTTTGGCGATGCTCATATTTACACGAATCACACTGAGCCATTGAAA 37988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655066829225000