Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq296 122 8e-23 seq119 105 7e-18 >seq296 Length=113092 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||| | |||||||||||| || || ||||| |||||| Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| | |||||| || || |||||| ||| || || || || || Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| |||| | ||| | ||||||| || || ||| Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || ||||| || || ||||| |||||||| Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq119 Length=197918 Score = 105 bits (116), Expect = 7e-18 Identities = 399/618 (65%), Gaps = 6/618 (1%) Strand=Plus/Minus Query 50115 GCCATGGAAAATGTTCACACACAAATGTACGGAACGTTAATTATTACATTGATTCCGGAC 50174 || ||||||||||| ||| | | |||||| || |||||| || | ||| || Sbjct 167771 GCTATGGAAAATGTACACTCGGAGATGTACTCAATATTAATTGAAACTTATATTAGAGAT 167712 Query 50175 AAAAAGCAACAAGACTTAATACTCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAG 50234 |||||| | ||||| || |||| || | || | |||| ||||| || ||| Sbjct 167711 GCAAAGCAGCGTGACTTCTTATTCAATGCAATTGAGACACTTCCATGTGTTAAGAAGAAG 167652 Query 50235 GACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGT 50293 | || ||||| || || |||| | ||| || | ||||||| ||||| | | Sbjct 167651 GCTGACTGGGCTTTAAATTGGATATCCAGCAAGAATGCAAACTTTGGT-GAACGAGTTAT 167593 Query 50294 GGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACAT 50353 || ||||| || ||||| | || ||| |||||||||||||| ||||||| || Sbjct 167592 TGCTTTTGCAGCTGTCGAAGGGATTTTCTTTAGTGGTAGCTTTGCAGCTATATTTTGGAT 167533 Query 50354 TAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGA 50413 ||| | ||| ||||||| || | || ||| || || | |||||| | ||||| Sbjct 167532 TAAGAAGAGAGGATTAATGCCAGGGTTGACATTTTCAAATGAACTTATTTCGAGAGACGA 167473 Query 50414 AGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATC 50473 |||| | || |||||||| || || ||||| || | | || | || | | Sbjct 167472 AGGACTTCATCGTGACTTTGCATGCTTAATGTACAA-AC-ATCTTGAA-CAGAAGCCACC 167416 Query 50474 ATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCAC 50533 | | |||| | | | || || ||| ||| || || | || || || || ||||| || Sbjct 167415 AAAGGAAAGAGTAGTTGAAATTATCACAGAGGCTGTAAAAATTGAGAAGGAATTTTTAAC 167356 Query 50534 GGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGA 50593 ||||| | || || ||||||||||||| || | ||| ||||||| || Sbjct 167355 TGACGCACTTCCAGTTAAGATGTTGGGCATGAATTGTGATTTAATGACTCAGTACATAGA 167296 Query 50594 GTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAA 50653 |||||||| || || ||| | |||||| ||| ||||||| | || Sbjct 167295 ATTTGTTGCTGATCATTTATTGGGTGAATTGGGACTTGATAAAGTCTATAATACCAAAAA 167236 Query 50654 CCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACG 50713 || || | |||||| | || || | |||||||| |||||||| |||||| || Sbjct 167235 TCCATTCTCATTTATGGAATTTATTTCACTTGAGGGCAAGACAAACTTCTTCGAACGAAA 167176 Query 50714 TGTAGGCGAATA-CAAAA 50730 || || ||||| ||||| Sbjct 167175 GGTTGGTGAATATCAAAA 167158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488385070530000