Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq442 163 6e-35 seq296 152 1e-31 seq726 131 3e-25 seq17255 105 1e-17 >seq442 Length=86436 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| |||||||| || || || ||||| || || || || || | | | ||| Sbjct 25002 CGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCA 25061 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| |||||||||||||||||| | | ||||||||||| || |||||||||||| Sbjct 25062 TCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTA 25121 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || || |||||||||||||| ||| || || ||||| | || || Sbjct 25122 TCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGCTCGACTTCGAGGGTAATT 25181 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| || || || || |||||||| Sbjct 25182 GTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 >seq296 Length=113092 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| || |||| |||||||||||||| ||||| || || Sbjct 112857 CCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGGATATTGTAGTCGCTC 112916 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||||||||| || ||||| | | ||||| ||||| || Sbjct 112917 AATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGCTGTTGGTCTGGTGGA 112976 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||| |||||||| |||||||||||||| || || || || ||| Sbjct 112977 ATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTGTCTGATGGCTCAACT 113036 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || || |||||||| ||||| || || || ||||| Sbjct 113037 TCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTGCAT 113083 >seq726 Length=60972 Score = 131 bits (144), Expect = 3e-25 Identities = 264/389 (68%), Gaps = 2/389 (1%) Strand=Plus/Minus Query 198146 CGTTGAAACGTTTATAGATGAAATAATTATAAGAAGAGAACTGTCGGATAATTTTTGTTA 198205 |||||| | ||| || ||| |||| || | ||||| || ||||||||||||| Sbjct 19684 CGTTGATGCCTTTTGTGAAGAAGCAATTGTACGTCGAGAATTGAGTGATAATTTTTGTTT 19625 Query 198206 CTATAATAAACATTACGATAGCGTACAGTCTACTCACGCATGGGCTAGAAGAACATTAGA 198265 ||||||||| ||||||| | || | | | | ||||||| | ||||||| | Sbjct 19624 TTATAATAAAGATTACGACAATCTAAAAGGAATTACAGATTGGGCTATGAAAACATTAAA 19565 Query 198266 AGATCACATTAATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCGGA 198325 |||||| ||| || | | ||| | ||| | ||| || | ||| |||| | Sbjct 19564 TGATCACCGTAAAGACAAACGTGATTATGTGTATACACGCAAAGAATTTGAAGAGGCAAA 19505 Query 198326 AACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCA 198385 ||| || || | |||||||| | ||||| || |||| || |||||| |||||||| Sbjct 19504 AACTCACGATGATTTATGGAATAGCGCACAAATTCAAATGACAAAAGAAGGTAAAATGCA 19445 Query 198386 TAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGA 198445 | | ||||| ||||||| |||||||||||||| | ||||||||| ||| || ||||| Sbjct 19444 TGGATTTTTGCGAATGTATTGGGCTAAAAAGATTTTAGAATGGACAGCAACGCCAGAAGA 19385 Query 198446 CGCT-TTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTA 198504 | | |||| | |||||| |||| || | | || || || | ||||| | Sbjct 19384 TGGTCTTGA-AACTGCAATCTATTTAAATGATCGCTTTAATCTTGATGGTAGAGATCCGA 19326 Query 198505 ACGGATACGTAGGTTGTATGTGGTCTATT 198533 |||| || || || || |||||| |||| Sbjct 19325 ACGGCTATGTGGGCTGCATGTGGAGTATT 19297 >seq17255 Length=1118 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||| ||||| || ||||||||||||||||| || || || |||||||||||||| ||| Sbjct 13 TGTTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTA 72 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || |||||||| || || || || || || || || || || || || ||| Sbjct 73 TCAGATGGCTCAACTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACGAAAATTTGC 132 Query 82809 ATT 82811 ||| Sbjct 133 ATT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981499814322475