Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq726 145 1e-29 >seq726 Length=60972 Score = 145 bits (160), Expect = 1e-29 Identities = 267/389 (69%), Gaps = 2/389 (1%) Strand=Plus/Minus Query 182829 CGTTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTA 182888 |||||| | ||| || ||| ||||||| | ||||| | ||||||||||||| Sbjct 19684 CGTTGATGCCTTTTGTGAAGAAGCAATTGTACGTCGAGAATTGAGTGATAATTTTTGTTT 19625 Query 182889 CTATAATAAACATTACGATAGTGTTCAGTCTACTCACGCATGGGCTAGAAGAACATTAGA 182948 ||||||||| ||||||| | | | | | | | ||||||| | ||||||| | Sbjct 19624 TTATAATAAAGATTACGACAATCTAAAAGGAATTACAGATTGGGCTATGAAAACATTAAA 19565 Query 182949 AGATCACGTTAATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGA 183008 |||||| ||| || | | ||| | ||| | ||| || | ||| ||||| | Sbjct 19564 TGATCACCGTAAAGACAAACGTGATTATGTGTATACACGCAAAGAATTTGAAGAGGCAAA 19505 Query 183009 AACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCA 183068 ||| || || | |||||||| ||||||| || |||| | |||||| |||||||| Sbjct 19504 AACTCACGATGATTTATGGAATAGCGCACAAATTCAAATGACAAAAGAAGGTAAAATGCA 19445 Query 183069 TAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGA 183128 | | ||||| |||||||| |||||||||||||| | ||||||||| ||| || ||||| Sbjct 19444 TGGATTTTTGCGAATGTATTGGGCTAAAAAGATTTTAGAATGGACAGCAACGCCAGAAGA 19385 Query 183129 TGCT-TTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTA 183187 || | |||| | |||||| | || || | | || || |||| ||||| | Sbjct 19384 TGGTCTTGA-AACTGCAATCTATTTAAATGATCGCTTTAATCTTGATGGTAGAGATCCGA 19326 Query 183188 ACGGATACGTAGGTTGTATGTGGTCTATT 183216 |||| || || || || |||||| |||| Sbjct 19325 ACGGCTATGTGGGCTGCATGTGGAGTATT 19297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903117309044000