Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq343 257 4e-63 seq782 100 7e-16 seq506 96.9 8e-15 seq113 89.7 1e-12 >seq343 Length=103200 Score = 257 bits (284), Expect = 4e-63 Identities = 444/636 (70%), Gaps = 17/636 (3%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||||| | || ||||| | ||| ||| |||||||||||||| |||||||||||| Sbjct 6635 CAATTATCCTCATGCTTCTTACTATCAATGTCAGATGATTCTATTGAGGGTATTTATGAT 6576 Query 110571 GCTCTTAAAGAAACTGCTC-TTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTC 110628 | | ||| || ||| | ||| | ||| | | || ||||||||| || | |||| Sbjct 6575 ACATTAAAACAA--TGCGCATTAATAAGCAAATCAGCAGGTGGAATTGGTGTTAATGTTC 6518 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 || ||||| |||||||| || |||| || | || || ||||| ||| |||| Sbjct 6517 ATTGCATTCGAGCAAAAGGAACATATATAGCTGGTACAAATGGGATTTCAAATGGCCTTG 6458 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAA 110748 |||||||||||||||| | ||| | || ||| ||||| | |||||||| || | | Sbjct 6457 TTCCAATGTTAAGAGTATACAATAATACCGCACGTTATGTTGACCAAGGTGGAAATAAAC 6398 Query 110749 AT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | ||| | ||||| || ||| | |||||||||||| ||||| |||||||| | | Sbjct 6397 GTCCAGGCGCGTTTGCAATATATTTGGAACCTTGGCATGGTGATATTTTTGAATTTCTGG 6338 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | |||||| ||| |||||| ||||| | || | ||||||||| ||| Sbjct 6337 ATTTAAAGAAAAATACTGGAAAAGAAGAAGTCAGAGCTAGAGACATGTTTTATGCATTGT 6278 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 ||||| ||||||| |||||| || ||| || | |||| |||||||| | ||||||| Sbjct 6277 GGATTCCAGATTTGTTCATGCGTCGGGTTGAAAACAATGAAATGTGGTCATTAATGTGTC 6218 Query 110926 CTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 || || || ||| ||||| | ||| || || | || |||| | ||||| ||| Sbjct 6217 CTAATAGTAGTCCCGGTCTTTTTGAATCGTACGGTGAGGAATTTGTGAAACTTTATGAAG 6158 Query 110986 AATATGAAAAAGAAGGCAAGT---TTCG-CAAACAAATTCCAGCTCAAGAACTTTGGTTC 111041 |||||| |||||| | || |||| ||| ||| || ||||| | |||||| Sbjct 6157 GCTATGAAGCAGAAGGAAGGTATATTCGTCAAGTAAA----GGCACAAGATTTGTGGTTC 6102 Query 111042 AAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATAT 111100 |||| |||| | ||||| |||||||| || |||||||| ||||||| || |||| Sbjct 6101 GCAATCATTGAGGCTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCAT-G 6043 Query 111101 TAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 || || ||||| |||||| |||| | || ||||| Sbjct 6042 CAACCGGAAATCAAATCAACAGAATCTTGGGACAAT 6007 Score = 105 bits (116), Expect = 2e-17 Identities = 557/875 (64%), Gaps = 66/875 (8%) Strand=Plus/Minus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| |||||| | | ||| | || | |||||||||||| || || |||||| Sbjct 5869 AAGTTACAAAAATAGTCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCG 5810 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 || || |||| |||| || || | ||| | || ||||| ||||| || ||||||| Sbjct 5809 TTGAAGAAGCTAAACGGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGAT 5750 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755 | || |||| ||||| ||||| |||| || | ||| ||| || || ||| |||| Sbjct 5749 TGGCAGATGCTTTTATTTTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATTTAA 5690 Query 112756 ATGAAAAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTA 112815 || || | || || |||||||| |||| | ||| || || || | ||| Sbjct 5689 ATCAACAAATATTTGAAACAATTTATTATGGTGCATTG---GAGTCCA--------GCT- 5642 Query 112816 TTaaaaaagcagaaaaatcaaagaaaaCTGATTTGAAATTTCCAGGAGCTTATGATAGTT 112875 | || ||||||| ||| || ||| | ||||| | || Sbjct 5641 GTGAATTAGCAGAACAAT----------TG--------------GGACCATATGAGACTT 5606 Query 112876 TCGAAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGATCAACAGCCTC 112935 ||| || | || | ||| | || ||| |||| ||| | |||||| || ||| Sbjct 5605 ACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATATGTGGGAT---AAGACTC 5549 Query 112936 TTGACAATGAACCAAAATAT--GATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGG 112993 ||| | | | |||||| || ||| ||||| | ||| ||| | | Sbjct 5548 --------CCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAATTA-AAAAGTTTG 5498 Query 112994 AACTAC-AAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCG 113052 || | ||| || || | | ||||||||||| ||||| || ||||| |||||| | | Sbjct 5497 GTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGATTTTGG 5438 Query 113053 GTAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAG 113112 |||||||||| | || || || ||||||||| ||||| || |||||||| | Sbjct 5437 GTAATAATGAGAGCTTTGAACCTTACACAAGTAATGTTTATAATCGTCGTGTTCTCAGTG 5378 Query 113113 GTGAGTTTGTACTTTGTAATAAATATCTGCAAGAAGAACTTCTCGGAA-TCGGTAAATGG 113171 |||| ||| | || |||| | |||| | ||| | || | ||| ||| |||| Sbjct 5377 GTGAATTTCAAGTTGTTAATCACCATCT-TATCAAGGATTTGACTGAACGTGGTTTATGG 5319 Query 113172 AACAATGAAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCA-AC-ATCTA--AA 113227 | | || |||| ||| |||||||| ||| | ||||| | || || || | || Sbjct 5318 GATGACGATATGAAGAACAAAATTATTGCAAATAATGGTTCAATACAGACTATTGAGCAA 5259 Query 113228 ATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTC-G 113286 ||| || ||| | ||| || ||| ||| || ||||||||||| | | | | Sbjct 5258 ATT-CCAGATGATATAAAAAATATATATAAAACGGTTTGGGAAATT-TCCGTCAAGACAC 5201 Query 113287 TAATTGATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTAT 113346 |||| | ||| |||| |||||||| ||||| || ||| ||||||| | || ||| Sbjct 5200 AAATTCAAATGTCTGCCGATCGTGGAGCTTTTATAGACCAAAGTCAGTCGTTTAA--TAT 5143 Query 113347 TTATG--CCGGACACCTCACCA-GATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAA 113403 | ||| | || ||| | | | || | || || || |||||||| ||||||| Sbjct 5142 TCATGTAGCTGA-ACCCAATTATGGGAAATTAACGTCCATTCATTTTTACGGATGGAAAA 5084 Query 113404 AAGGTTTAAAAACAGGTATGTATTATTTGCGAACA 113438 || | ||||| || |||||||| || |||||| Sbjct 5083 TGGGACTGAAAACTGGAATGTATTACTTACGAACA 5049 >seq782 Length=54866 Score = 100 bits (110), Expect = 7e-16 Identities = 345/525 (66%), Gaps = 20/525 (4%) Strand=Plus/Plus Query 279821 GAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGT 279880 ||| |||| | || || ||| |||| | |||||| ||||| | | | |||||| Sbjct 42451 GAATTGATTCTCTTCTCAAATACTGATAATATTCGTTCAATTCCATGTGTTGTTGATGGT 42510 Query 279881 TTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAA 279940 || || ||| || ||||| || || || | || || ||| | || |||||| Sbjct 42511 TTTAAGCCTGGTCAACGTAAAATCATTTTTACATGCTTTAAACGTAATGACAAAAAGGAG 42570 Query 279941 ATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACA---TGCAGGTTATCATCACGGT 279997 || ||||||||||| || |||| ||| | ||||| |||| |||||||| ||| Sbjct 42571 GTTAAAGTTGCTCAGTTGGCTGGTTCCGTTGCCGAACAGAGTGCA---TATCATCATGGT 42627 Query 279998 GAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAAC 280057 |||| || ||| || | ||||| | | || ||| ||| | | | ||||| Sbjct 42628 GAAGTTTCACTTTGCAGTACAATTGTTAATTTGGCTCAAAATTATGTCGGAAGTAACAAT 42687 Query 280058 TTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCAC-AATGGAAAAGATCA 280116 | ||| ||||| ||| |||||||| |||||| | ||| || || ||||||||| Sbjct 42688 ATTAATTTGCTTCAACCTAATGGTCAGTTTGGTACGCGT-TTAACGGGAGGAAAAGATTC 42746 Query 280117 TGGTAGTGCTCGTTACATACATAC-ATGTCTTTCAGATATTACAAACAAGTTA-TTTATC 280174 || ||| ||||||| || || ||| ||||| | ||| | | || | | || Sbjct 42747 TGCAAGTCCTCGTTATATTTTCACGATG-CTTTC-GCCATT---AGCTCGTCACATCTTC 42801 Query 280175 AATTC---TGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTATTGAACCA 280231 || | |||| || ||| | | | | || || || || |||||| || Sbjct 42802 CATCCACATGATGATCCTTTGCTTAACTTTTTGGATGAAGACAATCAGCGTATTGAGCCT 42861 Query 280232 ACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAATTGGAACA 280291 |||||||| ||||||||| || ||| ||||||| ||||| ||| |||| ||||| || Sbjct 42862 GAATATTATGTTCCAATTATTCCAATGGTTCTTGTAAATGGCGCTGAAGGTATTGGTACT 42921 Query 280292 GGTTATTCTACATCTATCCCAATGT-ACAATCCAATTGATATTAT 280335 || | || ||| || || |||| | |||||| ||| ||||| Sbjct 42922 GGATGGTCAACAAAAATTCC-ATGTCATAATCCACGTGAAATTAT 42965 Score = 86.0 bits (94), Expect = 1e-11 Identities = 669/1054 (63%), Gaps = 81/1054 (8%) Strand=Plus/Plus Query 278639 AAAC-CTAATTCAAGATGGGAAATTGCTCTATCACCTTCTGAGGAA---TTTAAACAAGT 278694 |||| ||||| | | |||||||| ||| || || || || || || | ||||| Sbjct 41223 AAACGCTAATGAACGTTGGGAAATCGCTTTAACATTATCAGATAAAGGATTCCAGCAAGT 41282 Query 278695 ATCTTTTGTTAATGGTATTAATACTTCAAAAGGTGGAAAACATGTTGATTATGTTCTTAA 278754 || || || ||| |||| || |||||||||| |||||||||||||||| | | Sbjct 41283 CTCATTCGTCAATTCTATTGCAACAACAAAAGGTGGTCGACATGTTGATTATGTTGCTGA 41342 Query 278755 TAAGATTGTGAAGAAGATTTCAGAGATAATTGAGAAGAAGGA-AAAGATTAAGGTAAAAT 278813 || |||||| ||| || | || | |||| |||||||| | || | | ||| || Sbjct 41343 TATGATTGTTAAGCAGGTCATGGAAACAATTAAGAAGAAGAATAAGGGCGGTGTTAATAT 41402 Query 278814 CAAATAAT----ATTAAAGAA-CACTTGTTTATATTTGTAAATTGTTTGATTATAAATCC 278868 |||| || | | ||||| ||| ||| | ||| | || || || ||| | ||||| Sbjct 41403 CAAACCATTCCAAGTTAAGAATCACATGTGGGTCTTTATTAACTGCTTAATTGTCAATCC 41462 Query 278869 TTCATTTGATTCGCAAACGAAAGATTTCCT--AACTACGAT-TAGCAGTAAATTCGGAAG 278925 |||||||||| ||||| || || | | ||| | || || ||| || || Sbjct 41463 AACATTTGATTCCCAAACTAAGGAAAACATGACACTTCAATCTAAAAGT---TTTGGCTC 41519 Query 278926 TAAGTTTGATTTTGGAGATAAGTTTTATCGTGATT-TAGCA--AAAACAGATATTATCAA 278982 || | | | || | || ||| ||||| || || | || ||| | | |||| || | Sbjct 41520 AAAATGCGCTCTTAGTGAAAAG-TTTAT--TGCTTCTGTCATGAAATCTGGTATTGTCGA 41576 Query 278983 GAATATTATCA-ATACTCATAATTTTAA-------AGAGAATAAGCTAACAAATAAAAAG 279034 || | || | | || | ||| ||||| | ||||| ||||| || ||| Sbjct 41577 GAGTGTTTTAACATGGGC-TAAATTTAAGGCACAGACAGAATTGGCTAA-----AACAAG 41630 Query 279035 AATGATGGCAAGAAGACCAATAAATTATATGGTATTCCAAAACTTGATGATGCAAACTGG 279094 | || |||||| | ||||| | || ||||||||| | || ||||||||| Sbjct 41631 --CGGTGCAAAGAAGTC---GAAATTGAAGGGAATTCCAAAATTGGAAGATGCAAACGAT 41685 Query 279095 GCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCT 279154 || ||| | | || || | ||| | ||| | | ||||||||||| || || Sbjct 41686 GCAGGAACTAGGAATTCAGTTAATTGTACATTAATCTTAACTGAGGGAGACTCAGCCAAA 41745 Query 279155 ACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTA 279214 ||||| || | |||| | |||| |||| |||||| ||||| || || || | Sbjct 41746 ACATTAGCTGTCAGTGGTCTCGGTGTTGTTGGACGTGATCTTTATGGTGTTTTCCCACTT 41805 Query 279215 AGAGGTAAAGTAATTAATGCTCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTA 279274 | ||||| | | || | |||||| | ||||| |||| || | Sbjct 41806 CGTGGTAAGCTGCTAAACGTCCGTGAT------GCTACACA--------TAAA-CAGATT 41850 Query 279275 AATGCTAATGCTGAATTGATTAATTTAAAACAAATATTGGGATTAGA--GCAAGGTAAAA 279332 | ||||||||| | | ||||| | |||| | || ||| | |||| ||| Sbjct 41851 CTCGAAAATGCTGAAATCAACAATTTGATTAAAATTCTCGGCTTACAATACAAGAAAAAG 41910 Query 279333 AAT-----ACAAAGATACATCAAG--TTTACGATATGGTAAAATTATTATTTTGACAGAC 279385 || |||| | || | ||| | || ||||| ||| | || || |||| || Sbjct 41911 TATAGTTCACAAGAAGACGTTAAGACACTTCGTTATGGAAAATTGATGATCATGACTGAT 41970 Query 279386 CAAGATTTAGATGGAAGTCACATTAAAGGATTAATACTTAATTGGGTTGATACTTTCTGG 279445 |||||| ||||| ||| ||||||||||| || |||| | || |||| ||| Sbjct 41971 CAAGATCAGGATGGTTCTCATATTAAAGGATTGCTAATTAACTTTATTCATACAAATTGG 42030 Query 279446 CCAGAATTGTTGAATCAAAATTT--TGTAAGTGTGTTTCAAACACCAATTATTAAGGCAA 279503 ||||||||| | || || || | ||| | | || ||||||||| |||| || | Sbjct 42031 CCAGAATTGCTTCGTCTTAAGTTCCTTGAAGAATTTATC--ACACCAATTGTTAAAGCCA 42088 Query 279504 CTAAAGGTAAAAAAGAAGAAGTAT-TTTATTC---ATTGCAGAAGTTTGAACAATGGAAA 279559 | |||| |||| ||||| | | || ||| ||| ||||| ||||| |||||||| Sbjct 42089 C-AAAG--AAAACCCAAGAATTGTCGTTCTTCTCAATTCCAGAA-TTTGAGGAATGGAAA 42144 Query 279560 -GATTCAGTTGAGAATTCAGCCT-CATTCCATACCAAGTATTTTAAAGGTTTAGCAACAT 279617 || || || ||| | | ||||| || ||||| | |||||||| | |||| Sbjct 42145 CGAGACA--CACCAAATCATCATACATTCAGTATAAAGTACTACAAAGGTTTGGGTACAT 42202 Query 279618 CCAATACTAAGGAAGCAAAAGAATATTTTAAAAA 279651 | | | |||||||| ||||||||||| |||| Sbjct 42203 CAACGTCCAAGGAAGCTAAAGAATATTTCCAAAA 42236 >seq506 Length=79393 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | |||||| | ||||||||||| |||||||| ||| | ||| || || ||| Sbjct 27287 TTCAATCGTCAACCAACTTTGCATAAAATGAGTATGATGGGTCACAGAGTTAAGGTTTTA 27228 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTTT 305452 || | | || || || | ||| | ||| ||||| ||||||||||| |||||| Sbjct 27227 CCTTGGTCTACTTTCCGTATGAATTTGAGT---TGTACATCTCCTTATAATGCTGATTTT 27171 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || ||||||||||| ||||||| || || || Sbjct 27170 GACGGTGATGAAATGAACTTGCATGTTCCACAGTC 27136 >seq113 Length=274809 Score = 89.7 bits (98), Expect = 1e-12 Identities = 92/117 (79%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 167238 ATCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGT 167296 |||||| ||||| ||||| ||||||||| |||| ||||| || || || || | || Sbjct 112868 ATCATT---CCACCTGCATTGTCGAATTCAC-CGCAGTAATTAGGGGCAGAGAAAAGCGT 112923 Query 167297 AACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 |||||| ||| ||| ||| ||||||||||| ||||||||||||| ||| ||||| Sbjct 112924 CACTAATGAACGTTTGGCAAAGAATTCATAACCGTCTTCAACAACTTGATGAGCACG 112980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186417062835025