Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq343 257 4e-63
seq782 100 7e-16
seq506 96.9 8e-15
seq113 89.7 1e-12
>seq343
Length=103200
Score = 257 bits (284), Expect = 4e-63
Identities = 444/636 (70%), Gaps = 17/636 (3%)
Strand=Plus/Minus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
||||| | || ||||| | ||| ||| |||||||||||||| ||||||||||||
Sbjct 6635 CAATTATCCTCATGCTTCTTACTATCAATGTCAGATGATTCTATTGAGGGTATTTATGAT 6576
Query 110571 GCTCTTAAAGAAACTGCTC-TTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTC 110628
| | ||| || ||| | ||| | ||| | | || ||||||||| || | ||||
Sbjct 6575 ACATTAAAACAA--TGCGCATTAATAAGCAAATCAGCAGGTGGAATTGGTGTTAATGTTC 6518
Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688
|| ||||| |||||||| || |||| || | || || ||||| ||| ||||
Sbjct 6517 ATTGCATTCGAGCAAAAGGAACATATATAGCTGGTACAAATGGGATTTCAAATGGCCTTG 6458
Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAA 110748
|||||||||||||||| | ||| | || ||| ||||| | |||||||| || | |
Sbjct 6457 TTCCAATGTTAAGAGTATACAATAATACCGCACGTTATGTTGACCAAGGTGGAAATAAAC 6398
Query 110749 AT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805
| ||| | ||||| || ||| | |||||||||||| ||||| |||||||| | |
Sbjct 6397 GTCCAGGCGCGTTTGCAATATATTTGGAACCTTGGCATGGTGATATTTTTGAATTTCTGG 6338
Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865
| | |||||| ||| |||||| ||||| | || | ||||||||| |||
Sbjct 6337 ATTTAAAGAAAAATACTGGAAAAGAAGAAGTCAGAGCTAGAGACATGTTTTATGCATTGT 6278
Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925
||||| ||||||| |||||| || ||| || | |||| |||||||| | |||||||
Sbjct 6277 GGATTCCAGATTTGTTCATGCGTCGGGTTGAAAACAATGAAATGTGGTCATTAATGTGTC 6218
Query 110926 CTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985
|| || || ||| ||||| | ||| || || | || |||| | ||||| |||
Sbjct 6217 CTAATAGTAGTCCCGGTCTTTTTGAATCGTACGGTGAGGAATTTGTGAAACTTTATGAAG 6158
Query 110986 AATATGAAAAAGAAGGCAAGT---TTCG-CAAACAAATTCCAGCTCAAGAACTTTGGTTC 111041
|||||| |||||| | || |||| ||| ||| || ||||| | ||||||
Sbjct 6157 GCTATGAAGCAGAAGGAAGGTATATTCGTCAAGTAAA----GGCACAAGATTTGTGGTTC 6102
Query 111042 AAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATAT 111100
|||| |||| | ||||| |||||||| || |||||||| ||||||| || ||||
Sbjct 6101 GCAATCATTGAGGCTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCAT-G 6043
Query 111101 TAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136
|| || ||||| |||||| |||| | || |||||
Sbjct 6042 CAACCGGAAATCAAATCAACAGAATCTTGGGACAAT 6007
Score = 105 bits (116), Expect = 2e-17
Identities = 557/875 (64%), Gaps = 66/875 (8%)
Strand=Plus/Minus
Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635
|||| |||||| | | ||| | || | |||||||||||| || || ||||||
Sbjct 5869 AAGTTACAAAAATAGTCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCG 5810
Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695
|| || |||| |||| || || | ||| | || ||||| ||||| || |||||||
Sbjct 5809 TTGAAGAAGCTAAACGGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGAT 5750
Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755
| || |||| ||||| ||||| |||| || | ||| ||| || || ||| ||||
Sbjct 5749 TGGCAGATGCTTTTATTTTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATTTAA 5690
Query 112756 ATGAAAAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTA 112815
|| || | || || |||||||| |||| | ||| || || || | |||
Sbjct 5689 ATCAACAAATATTTGAAACAATTTATTATGGTGCATTG---GAGTCCA--------GCT- 5642
Query 112816 TTaaaaaagcagaaaaatcaaagaaaaCTGATTTGAAATTTCCAGGAGCTTATGATAGTT 112875
| || ||||||| ||| || ||| | ||||| | ||
Sbjct 5641 GTGAATTAGCAGAACAAT----------TG--------------GGACCATATGAGACTT 5606
Query 112876 TCGAAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGATCAACAGCCTC 112935
||| || | || | ||| | || ||| |||| ||| | |||||| || |||
Sbjct 5605 ACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGATATGTGGGAT---AAGACTC 5549
Query 112936 TTGACAATGAACCAAAATAT--GATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGG 112993
||| | | | |||||| || ||| ||||| | ||| ||| | |
Sbjct 5548 --------CCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAATTA-AAAAGTTTG 5498
Query 112994 AACTAC-AAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCG 113052
|| | ||| || || | | ||||||||||| ||||| || ||||| |||||| | |
Sbjct 5497 GTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGCTCAGATTTTGG 5438
Query 113053 GTAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAG 113112
|||||||||| | || || || ||||||||| ||||| || |||||||| |
Sbjct 5437 GTAATAATGAGAGCTTTGAACCTTACACAAGTAATGTTTATAATCGTCGTGTTCTCAGTG 5378
Query 113113 GTGAGTTTGTACTTTGTAATAAATATCTGCAAGAAGAACTTCTCGGAA-TCGGTAAATGG 113171
|||| ||| | || |||| | |||| | ||| | || | ||| ||| ||||
Sbjct 5377 GTGAATTTCAAGTTGTTAATCACCATCT-TATCAAGGATTTGACTGAACGTGGTTTATGG 5319
Query 113172 AACAATGAAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCA-AC-ATCTA--AA 113227
| | || |||| ||| |||||||| ||| | ||||| | || || || | ||
Sbjct 5318 GATGACGATATGAAGAACAAAATTATTGCAAATAATGGTTCAATACAGACTATTGAGCAA 5259
Query 113228 ATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTC-G 113286
||| || ||| | ||| || ||| ||| || ||||||||||| | | | |
Sbjct 5258 ATT-CCAGATGATATAAAAAATATATATAAAACGGTTTGGGAAATT-TCCGTCAAGACAC 5201
Query 113287 TAATTGATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTAT 113346
|||| | ||| |||| |||||||| ||||| || ||| ||||||| | || |||
Sbjct 5200 AAATTCAAATGTCTGCCGATCGTGGAGCTTTTATAGACCAAAGTCAGTCGTTTAA--TAT 5143
Query 113347 TTATG--CCGGACACCTCACCA-GATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAA 113403
| ||| | || ||| | | | || | || || || |||||||| |||||||
Sbjct 5142 TCATGTAGCTGA-ACCCAATTATGGGAAATTAACGTCCATTCATTTTTACGGATGGAAAA 5084
Query 113404 AAGGTTTAAAAACAGGTATGTATTATTTGCGAACA 113438
|| | ||||| || |||||||| || ||||||
Sbjct 5083 TGGGACTGAAAACTGGAATGTATTACTTACGAACA 5049
>seq782
Length=54866
Score = 100 bits (110), Expect = 7e-16
Identities = 345/525 (66%), Gaps = 20/525 (4%)
Strand=Plus/Plus
Query 279821 GAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGT 279880
||| |||| | || || ||| |||| | |||||| ||||| | | | ||||||
Sbjct 42451 GAATTGATTCTCTTCTCAAATACTGATAATATTCGTTCAATTCCATGTGTTGTTGATGGT 42510
Query 279881 TTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAA 279940
|| || ||| || ||||| || || || | || || ||| | || ||||||
Sbjct 42511 TTTAAGCCTGGTCAACGTAAAATCATTTTTACATGCTTTAAACGTAATGACAAAAAGGAG 42570
Query 279941 ATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACA---TGCAGGTTATCATCACGGT 279997
|| ||||||||||| || |||| ||| | ||||| |||| |||||||| |||
Sbjct 42571 GTTAAAGTTGCTCAGTTGGCTGGTTCCGTTGCCGAACAGAGTGCA---TATCATCATGGT 42627
Query 279998 GAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAAC 280057
|||| || ||| || | ||||| | | || ||| ||| | | | |||||
Sbjct 42628 GAAGTTTCACTTTGCAGTACAATTGTTAATTTGGCTCAAAATTATGTCGGAAGTAACAAT 42687
Query 280058 TTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCAC-AATGGAAAAGATCA 280116
| ||| ||||| ||| |||||||| |||||| | ||| || || |||||||||
Sbjct 42688 ATTAATTTGCTTCAACCTAATGGTCAGTTTGGTACGCGT-TTAACGGGAGGAAAAGATTC 42746
Query 280117 TGGTAGTGCTCGTTACATACATAC-ATGTCTTTCAGATATTACAAACAAGTTA-TTTATC 280174
|| ||| ||||||| || || ||| ||||| | ||| | | || | | ||
Sbjct 42747 TGCAAGTCCTCGTTATATTTTCACGATG-CTTTC-GCCATT---AGCTCGTCACATCTTC 42801
Query 280175 AATTC---TGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTATTGAACCA 280231
|| | |||| || ||| | | | | || || || || |||||| ||
Sbjct 42802 CATCCACATGATGATCCTTTGCTTAACTTTTTGGATGAAGACAATCAGCGTATTGAGCCT 42861
Query 280232 ACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAATTGGAACA 280291
|||||||| ||||||||| || ||| ||||||| ||||| ||| |||| ||||| ||
Sbjct 42862 GAATATTATGTTCCAATTATTCCAATGGTTCTTGTAAATGGCGCTGAAGGTATTGGTACT 42921
Query 280292 GGTTATTCTACATCTATCCCAATGT-ACAATCCAATTGATATTAT 280335
|| | || ||| || || |||| | |||||| ||| |||||
Sbjct 42922 GGATGGTCAACAAAAATTCC-ATGTCATAATCCACGTGAAATTAT 42965
Score = 86.0 bits (94), Expect = 1e-11
Identities = 669/1054 (63%), Gaps = 81/1054 (8%)
Strand=Plus/Plus
Query 278639 AAAC-CTAATTCAAGATGGGAAATTGCTCTATCACCTTCTGAGGAA---TTTAAACAAGT 278694
|||| ||||| | | |||||||| ||| || || || || || || | |||||
Sbjct 41223 AAACGCTAATGAACGTTGGGAAATCGCTTTAACATTATCAGATAAAGGATTCCAGCAAGT 41282
Query 278695 ATCTTTTGTTAATGGTATTAATACTTCAAAAGGTGGAAAACATGTTGATTATGTTCTTAA 278754
|| || || ||| |||| || |||||||||| |||||||||||||||| | |
Sbjct 41283 CTCATTCGTCAATTCTATTGCAACAACAAAAGGTGGTCGACATGTTGATTATGTTGCTGA 41342
Query 278755 TAAGATTGTGAAGAAGATTTCAGAGATAATTGAGAAGAAGGA-AAAGATTAAGGTAAAAT 278813
|| |||||| ||| || | || | |||| |||||||| | || | | ||| ||
Sbjct 41343 TATGATTGTTAAGCAGGTCATGGAAACAATTAAGAAGAAGAATAAGGGCGGTGTTAATAT 41402
Query 278814 CAAATAAT----ATTAAAGAA-CACTTGTTTATATTTGTAAATTGTTTGATTATAAATCC 278868
|||| || | | ||||| ||| ||| | ||| | || || || ||| | |||||
Sbjct 41403 CAAACCATTCCAAGTTAAGAATCACATGTGGGTCTTTATTAACTGCTTAATTGTCAATCC 41462
Query 278869 TTCATTTGATTCGCAAACGAAAGATTTCCT--AACTACGAT-TAGCAGTAAATTCGGAAG 278925
|||||||||| ||||| || || | | ||| | || || ||| || ||
Sbjct 41463 AACATTTGATTCCCAAACTAAGGAAAACATGACACTTCAATCTAAAAGT---TTTGGCTC 41519
Query 278926 TAAGTTTGATTTTGGAGATAAGTTTTATCGTGATT-TAGCA--AAAACAGATATTATCAA 278982
|| | | | || | || ||| ||||| || || | || ||| | | |||| || |
Sbjct 41520 AAAATGCGCTCTTAGTGAAAAG-TTTAT--TGCTTCTGTCATGAAATCTGGTATTGTCGA 41576
Query 278983 GAATATTATCA-ATACTCATAATTTTAA-------AGAGAATAAGCTAACAAATAAAAAG 279034
|| | || | | || | ||| ||||| | ||||| ||||| || |||
Sbjct 41577 GAGTGTTTTAACATGGGC-TAAATTTAAGGCACAGACAGAATTGGCTAA-----AACAAG 41630
Query 279035 AATGATGGCAAGAAGACCAATAAATTATATGGTATTCCAAAACTTGATGATGCAAACTGG 279094
| || |||||| | ||||| | || ||||||||| | || |||||||||
Sbjct 41631 --CGGTGCAAAGAAGTC---GAAATTGAAGGGAATTCCAAAATTGGAAGATGCAAACGAT 41685
Query 279095 GCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCT 279154
|| ||| | | || || | ||| | ||| | | ||||||||||| || ||
Sbjct 41686 GCAGGAACTAGGAATTCAGTTAATTGTACATTAATCTTAACTGAGGGAGACTCAGCCAAA 41745
Query 279155 ACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTA 279214
||||| || | |||| | |||| |||| |||||| ||||| || || || |
Sbjct 41746 ACATTAGCTGTCAGTGGTCTCGGTGTTGTTGGACGTGATCTTTATGGTGTTTTCCCACTT 41805
Query 279215 AGAGGTAAAGTAATTAATGCTCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTA 279274
| ||||| | | || | |||||| | ||||| |||| || |
Sbjct 41806 CGTGGTAAGCTGCTAAACGTCCGTGAT------GCTACACA--------TAAA-CAGATT 41850
Query 279275 AATGCTAATGCTGAATTGATTAATTTAAAACAAATATTGGGATTAGA--GCAAGGTAAAA 279332
| ||||||||| | | ||||| | |||| | || ||| | |||| |||
Sbjct 41851 CTCGAAAATGCTGAAATCAACAATTTGATTAAAATTCTCGGCTTACAATACAAGAAAAAG 41910
Query 279333 AAT-----ACAAAGATACATCAAG--TTTACGATATGGTAAAATTATTATTTTGACAGAC 279385
|| |||| | || | ||| | || ||||| ||| | || || |||| ||
Sbjct 41911 TATAGTTCACAAGAAGACGTTAAGACACTTCGTTATGGAAAATTGATGATCATGACTGAT 41970
Query 279386 CAAGATTTAGATGGAAGTCACATTAAAGGATTAATACTTAATTGGGTTGATACTTTCTGG 279445
|||||| ||||| ||| ||||||||||| || |||| | || |||| |||
Sbjct 41971 CAAGATCAGGATGGTTCTCATATTAAAGGATTGCTAATTAACTTTATTCATACAAATTGG 42030
Query 279446 CCAGAATTGTTGAATCAAAATTT--TGTAAGTGTGTTTCAAACACCAATTATTAAGGCAA 279503
||||||||| | || || || | ||| | | || ||||||||| |||| || |
Sbjct 42031 CCAGAATTGCTTCGTCTTAAGTTCCTTGAAGAATTTATC--ACACCAATTGTTAAAGCCA 42088
Query 279504 CTAAAGGTAAAAAAGAAGAAGTAT-TTTATTC---ATTGCAGAAGTTTGAACAATGGAAA 279559
| |||| |||| ||||| | | || ||| ||| ||||| ||||| ||||||||
Sbjct 42089 C-AAAG--AAAACCCAAGAATTGTCGTTCTTCTCAATTCCAGAA-TTTGAGGAATGGAAA 42144
Query 279560 -GATTCAGTTGAGAATTCAGCCT-CATTCCATACCAAGTATTTTAAAGGTTTAGCAACAT 279617
|| || || ||| | | ||||| || ||||| | |||||||| | ||||
Sbjct 42145 CGAGACA--CACCAAATCATCATACATTCAGTATAAAGTACTACAAAGGTTTGGGTACAT 42202
Query 279618 CCAATACTAAGGAAGCAAAAGAATATTTTAAAAA 279651
| | | |||||||| ||||||||||| ||||
Sbjct 42203 CAACGTCCAAGGAAGCTAAAGAATATTTCCAAAA 42236
>seq506
Length=79393
Score = 96.9 bits (106), Expect = 8e-15
Identities = 115/155 (74%), Gaps = 6/155 (4%)
Strand=Plus/Minus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|||||| | |||||| | ||||||||||| |||||||| ||| | ||| || || |||
Sbjct 27287 TTCAATCGTCAACCAACTTTGCATAAAATGAGTATGATGGGTCACAGAGTTAAGGTTTTA 27228
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTTT 305452
|| | | || || || | ||| | ||| ||||| ||||||||||| ||||||
Sbjct 27227 CCTTGGTCTACTTTCCGTATGAATTTGAGT---TGTACATCTCCTTATAATGCTGATTTT 27171
Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
|| || ||||||||||| ||||||| || || ||
Sbjct 27170 GACGGTGATGAAATGAACTTGCATGTTCCACAGTC 27136
>seq113
Length=274809
Score = 89.7 bits (98), Expect = 1e-12
Identities = 92/117 (79%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 167238 ATCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGT 167296
|||||| ||||| ||||| ||||||||| |||| ||||| || || || || | ||
Sbjct 112868 ATCATT---CCACCTGCATTGTCGAATTCAC-CGCAGTAATTAGGGGCAGAGAAAAGCGT 112923
Query 167297 AACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
|||||| ||| ||| ||| ||||||||||| ||||||||||||| ||| |||||
Sbjct 112924 CACTAATGAACGTTTGGCAAAGAATTCATAACCGTCTTCAACAACTTGATGAGCACG 112980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186417062835025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |