Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq10 159 5e-34 >seq10 Length=552578 Score = 159 bits (176), Expect = 5e-34 Identities = 264/379 (70%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 161315 TACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACA 161374 || |||||||| || || |||||||| ||| || || ||||| | || | Sbjct 300330 TATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAG 300389 Query 161375 ACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTA 161434 ||||| ||||| ||| || |||||||| ||||||||||| |||||||| ||||| | Sbjct 300390 ACACCATTCTATCCAAGAAGTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCATT 300449 Query 161435 AAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAG 161494 | || ||| | || ||| || ||| | || ||| ||||||| |||| || ||||| Sbjct 300450 ATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAA 300509 Query 161495 TCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATT 161554 || ||| | | || || | |||||| || | || ||||| | | | | ||| Sbjct 300510 TCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAATT 300569 Query 161555 --AGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGG 161612 | || || | ||| || | | | || |||||||| |||||| ||| ||||||| Sbjct 300570 TCATTAAAG--CAACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTGGG 300627 Query 161613 GTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATG 161672 ||||||| | ||||| ||||| ||||||||| ||||||| |||||||| || || | Sbjct 300628 GTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGAAG 300687 Query 161673 ACTATGTGATTGCCACAGG 161691 | | ||| ||||| ||||| Sbjct 300688 ATTTTGTAATTGCTACAGG 300706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729692144777000