Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq343 574 7e-159 seq119 289 4e-73 seq205 105 9e-18 >seq343 Length=103200 Score = 574 bits (636), Expect = 7e-159 Identities = 1100/1600 (69%), Gaps = 41/1600 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||||||||| | | ||||||||||| |||| || ||||| || |||||||| Sbjct 5020 GTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCAGTTTTCAGT 5079 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||||||||| ||||| || |||| ||| |||| | || || |||| | Sbjct 5080 CCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGTTCAGCTACA 5139 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 |||||||| | ||| |||||||| || || |||||||| | ||| || | ||||| || Sbjct 5140 TGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGACATTTGAAT- 5198 Query 68554 ATACTCTTTTGA--GGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | | | |||| | ||||||||||| || ||| | || | ||| ||||||||||||| Sbjct 5199 -TTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCATCTGGAA 5257 Query 68612 --GGCTC-GTATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCAT 68668 |||| || | || || || ||| || | |||||| | ||||| || || |||| Sbjct 5258 TTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCATATCGTCAT 5317 Query 68669 TCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCC 68728 ||| || | || || ||| | | | ||||| ||||||| | ||||||||| | Sbjct 5318 CCCATAAACCACGTTCAGTCAAATCCTTGATAAGATGGTGATTAACAACTTGAAATTCAC 5377 Query 68729 CA--GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT-TCATTAT 68785 || || |||| | |||| | |||| |||||| || || |||| || || | ||||||| Sbjct 5378 CACTGAGAACA--CGACGATTATAAACATTACTTGTGTAAGGTT-CAAAGCTCTCATTAT 5434 Query 68786 TTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAA 68845 | |||| ||| |||||||||||||| || ||||| ||||| | || | ||||| | Sbjct 5435 TACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAATTTCGGA 5494 Query 68846 GACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA 68905 ||||| || | ||||| ||||||||| || ||||||||| | ||| | || Sbjct 5495 GACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTGGGAGTCT 5554 Query 68906 CATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATG--ATCCATTATATGTTTC 68963 || ||| | ||| ||||||| | || || | || | |||||| || || || Sbjct 5555 TATCCCACATATCATATTGTAATACACCTTT--TGACACCGGACATCCATCGTAAGTCTC 5612 Query 68964 ATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGT 69023 ||| ||||| ||||| |||| |||||| || | ||| |||||||| ||||||||||| Sbjct 5613 ATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCATAATAAATTGT 5672 Query 69024 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTC--TAGACTATCGAATGG-ATAATGTAA 69080 ||| || || | | ||| | || || ||||| |||| || |||| || | | Sbjct 5673 TTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGA--TTCATATGGCATTCT-CAT 5729 Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 | |||||| |||||||||||||| ||||| ||||| || ||||| | |||||| || Sbjct 5730 CAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGATGTCTAAAGTT 5789 Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 ||| | || ||||||| || ||||| ||||| | | ||||||||||| | ||| | Sbjct 5790 TGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTATTCAAATTCCT 5849 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCA---TCTAT 69254 |||| ||| || ||||| | |||| |||| ||| | || || | | | | Sbjct 5850 TGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTCTCTTCGATTTTGTTT 5909 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||||||||| | || | ||||||| |||||||||||| || |||| | ||| Sbjct 5910 GACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGCAACTTCATCCTTACTTGA 5969 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||||| ||| || ||||||| ||| ||| || ||||| ||||| || ||||| Sbjct 5970 ATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGTCCCAAGATTCTGTTGATT 6029 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 || ||| || | ||||| || || ||| | || ||||||||||| | |||| Sbjct 6030 TGATTTCCGGTTGCATGAATCCTTATACAGCATATAAGGTGTACCAGTTTCTACTTGAGC 6089 Query 69435 TTCGATAATAGATTTCCAA--ACGACCCT--AGCATTTATTACGGTCTTGTAACGCTTC- 69489 || || |||| | || || | || || |||| | | | || |||| Sbjct 6090 CTCAAT----GATTGCGAACCACAAATCTTGTGCCTTTACT--TGACGAATATACCTTCC 6143 Query 69490 -TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| |||||| | ||| || | ||||| || || | ||| | || Sbjct 6144 TTCTGCTTCATAGCCTTCATAAAGTTTCACAAATTCCTCACCGTACGATTCAAAAAGACC 6203 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||| ||| |||||||| |||||||||| |||| | | ||| || ||| || Sbjct 6204 GGGACTACTATTAGGACACATTAATGACCACATTTCATTGTTTTCAACCCGACGCATGAA 6263 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||| |||||||| | || ||| | ||||| | ||| |||||| ||||| || Sbjct 6264 CAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTCTGACTTCTTCTTTTCCAGT 6323 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 |||||| || | ||| ||||| || | ||||||| |||||| ||||| | |||||| || Sbjct 6324 ATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCCAAGGTTCCAAATATATTGC 6383 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || ||||||||||| || || || | || | || || ||||| || || Sbjct 6384 AAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAACGTGCGGTATTATTGTATAC 6443 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 ||| | ||| |||| || ||||| || | |||||||| |||| ||||| ||||| | Sbjct 6444 TCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTACCAGCTATATATGTTCCTTT 6503 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 ||| ||||| | || | | ||| ||||| ||||| ||| |||| || || Sbjct 6504 TGCTCGAATGCAATGAACATTAACACCAATTCCACCTGCTGATTTGCTTATTAATGCGCA 6563 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 |||| ||||| ||||| |||||||| || ||||||| Sbjct 6564 TTGTTTTAATGTATCATAAATACCCTCAATAGAATCATCT 6603 >seq119 Length=197918 Score = 289 bits (320), Expect = 4e-73 Identities = 578/843 (69%), Gaps = 35/843 (4%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTC--TCGAAAAAATTAGTTTTGC 39368 ||||||||||| | ||||| |||||||||| | |||| ||||| || || || |||| Sbjct 167143 GACATAACTCCACTCTTTTGATATTCACCAA--CCTTTCGTTCGAAGAAGTTTGTCTTGC 167200 Query 39369 CTTCCAATGATATATTTTCCATGAAATCA-AACGGATTAGTTGCATTATAtttttttttA 39427 | || | ||| ||| |||||| |||| | || ||||| | | |||||| ||| | | Sbjct 167201 CCTCAAGTGAAATAAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACTTTATCA 167259 Query 39428 AATCCTAATTC-TGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 | ||| ||||| ||| ||| ||| ||||||||||||||||| |||| | || Sbjct 167260 AGTCCCAATTCACCCAATAAAT-GATCAGCAACAAATTCTATGTACTGAGTCATTAAATC 167318 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 ||||||||| || | | |||||||| || || || |||| ||| || || || || | Sbjct 167319 ACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGTTAAAAATTCCTTCTCAATTTT 167378 Query 39547 TACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT---AAATG 39603 ||| |||||||| || || | ||||| || | ||||| | | | | ||| Sbjct 167379 TACAGCCTCTGTGATAAT---TTCAACTACTCTTTCCTTTGGTGGCTTCTGTTCAAGATG 167435 Query 39604 TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 ||| |||||||||| || ||||||| ||| || || || ||||| ||| | ||| || Sbjct 167436 TTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATT 167495 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723 |||||||| | || ||||||| || | ||| || | ||||||||| || ||||| Sbjct 167496 TGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCAAAATATAGCTGCAAAGCT 167555 Query 39724 TCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT 39783 ||| |||||| || ||||| || |||||||| |||| || || || || | ||| Sbjct 167556 ACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAACTCGTTCACCAAAGTTTGC 167615 Query 39784 A-TCATTATG--TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 | || | || |||||| || ||||| ||||| |||||||| ||||| || | ||| Sbjct 167616 ATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTTCTTCTTAACACATGGAAGTGT 167675 Query 39841 TTCTATAGCATT---AAAGAGATAA---TGTTTTTCATCACTATCTTTAACATATGTATC 39894 || || ||||| |||| | | || ||| | |||| ||| ||| || || Sbjct 167676 CTCAATTGCATTGAATAAGAAGTCACGCTGCTTTGC------ATCTCTAATATAAGTTTC 167729 Query 39895 TATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 ||||| | ||||| || || || | ||||| || || || || ||||| || || Sbjct 167730 AATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGCAATTTGGAATCCATAGAA 167789 Query 39955 ACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCAC 40014 ||| ||||| | || ||| || || || || | || ||||| ||||| || Sbjct 167790 GAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTCAATTAAATTCTCATTTAC 167849 Query 40015 TATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTTCATC 40071 || |||||| || ||||| || || |||||||| ||||||| | | ||| Sbjct 167850 GATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGATAAAATGACGCTCTGAATC 167909 Query 40072 GGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131 | | || |||||||| | ||||||||||||| ||| ||||| || ||||||| Sbjct 167910 ---CTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGACTTCCTCGACTGTCCA 167966 Query 40132 AAA 40134 || Sbjct 167967 GAA 167969 >seq205 Length=143123 Score = 105 bits (116), Expect = 9e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 ||||||| |||||| || ||||||| ||| | |||||| ||||| || | ||||||| Sbjct 86381 AAGTCACGATGTAGTCCTTCATCTCGTGAAATGAGTTCGTTTGAAAAAGTCAATCCAGGC 86322 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG--AAAAGAAGATGC 39740 ||||| || |||||||| ||| |||| || || || |||| | | | |||| || || Sbjct 86321 ATTAGTCCTCGCTTTTTTAGCTAAAAGATTGCTGC-AAAGCTTCTGCTAAAAAAATATAA 86263 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 |||||| || |||||||||| || ||| || || Sbjct 86262 TTTCTACAGCGGCAAATGCAATAATTCTTTCACC 86229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686685339981000