Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq767 233 2e-56 seq119 196 4e-45 seq10553 172 4e-38 seq933 95.1 1e-14 >seq767 Length=55330 Score = 233 bits (258), Expect = 2e-56 Identities = 402/573 (70%), Gaps = 12/573 (2%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 |||||| | ||||| |||||||||||||||| |||||||||||| || |||||| | || Sbjct 37575 GGTGATTTGGGTCCAGTTTATGGATTTCAGTGGCGACATTTTGGTGCCAAATATAAAAC- 37633 Query 40926 ATGTACTCTGAT-TATACCAA--TAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 ||| | |||| ||| || ||||||| || |||||| || || || || ||| Sbjct 37634 ATG--CGATGATGAATATGAAGGCCAAGGAATTGACCAATTAAAGGATGTCATTGA-ACG 37690 Query 40983 -ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 || ||| || |||| || || ||||| |||||| |||| ||||| ||| |||| | Sbjct 37691 CATCAAAGCCAATCCAAATGATCGTCGTATTATATTGAGCGCATGGAATCCAGTGGACAT 37750 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 | |||||| | ||||| ||||| | | ||| ||||| || |||||||| Sbjct 37751 TCCACAAATGGCACTTCCACCATGTCACTGTCTCGTTCAATTTTATGTCGCTAATGGTGA 37810 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 | || || ||||| || |||||||||| ||| ||||| || || || || || || || Sbjct 37811 ATTGAGCTGCCAATTATACCAAAGATCAGCTGATATGGGTCTTGGAGTTCCTTTCAATAT 37870 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221 || ||||| | | ||||| |||||||| || ||||| ||||| || |||||||| Sbjct 37871 TGCATCGTATGCCTTATTGACGTACATGATTGCTCATGTTACAAATTTGAAGCCTGGTGA 37930 Query 41222 ATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGA 41281 |||||||| || || || |||| |||||||||| ||||||| ||||| || | ||| Sbjct 37931 TTTTGTTCATACTTTTGGCGATGCTCATATTTACACGAATCACACTGAGCCATTGAAAGA 37990 Query 41282 ACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAA 41341 ||||| ||| || || | ||||| ||| | | || || || ||| || Sbjct 37991 GCAACTCGAACGTAAGCCACGTCCATTCCCACAGTTGAAAATCAAGCGTCAAGTTTCTAA 38050 Query 41342 CATTGATGATTTTTGCATCGATGATTTTGTCGT--TTGCGATTACAATCCGTACCCTAAA 41399 || ||||||||| | || ||||||| || ||| || || ||||||| || Sbjct 38051 TATCGATGATTTTAAGTTTGAAGATTTTGAAGTCATTG-GA-TATGATCCGTATCCACCT 38108 Query 41400 ATCCACATGGACATGTCTGTATGATAATTGATT 41432 || | ||||| ||| |||| | || ||| ||| Sbjct 38109 ATTAAAATGGAAATGGCTGTTTAATTATTAATT 38141 >seq119 Length=197918 Score = 196 bits (216), Expect = 4e-45 Identities = 499/749 (67%), Gaps = 24/749 (3%) Strand=Plus/Minus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 |||||||| || || || || || |||||||| || || || || ||||| ||| Sbjct 167897 CATTTTATCTCGCATGTATTAGCTTTCTTTGCTGCATCTGATGGCATCGTAAATGAGAAT 167838 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 || || || || || ||||||||| | |||||||| |||| || ||||| || Sbjct 167837 TTAATTGAGCGTTTCAGTCAGGAAGTTCAAGTTCCAGAAGCTCGATTCTTCTATGGATTC 167778 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 |||||||| || |||||| | || ||||| |||||| | | || || || || || Sbjct 167777 CAAATTGCTATGGAAAATGTACACTCGGAGATGTACTCAATATTAATTGAAACTTATATT 167718 Query 44015 AAAGATGG---GCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGA 44069 | ||||| ||| || || | || || || ||||| || || ||| | || || | Sbjct 167717 AGAGATGCAAAGCAGCGTGA--CTTC--TTATTCAATGCAATTGAGACACTTCCATGTG- 167663 Query 44070 TTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA-----AATGATTCTTTTGG 44124 |||| | || || |||||||| | || |||||| | || |||| ||||| Sbjct 167662 TTAAGAAGAAGGCTGACTGGGCTTTAAATTGGATA--TCCAGCAAGAATGCAAACTTTGG 167605 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 |||||| || | || ||||||| ||| ||||| ||||||||| || ||||| || Sbjct 167604 TGAACGAGTTATTGCTTTTGCAGCTGTCGAAGGGATTTTCTTTAGTGGTAGCTTTGCAGC 167545 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||||| | ||||| |||| || ||||| |||||||| ||||||||||| | || Sbjct 167544 TATATTTTGGATTAAGAAGAGAGGATTAATGCCAGGGTTGACATTTTCAAATGAACTTAT 167485 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 | || ||||| | ||| | || ||||| ||||| | | |||| || Sbjct 167484 TTCGAGAGACGAAGGACTTCATCGTGACTTTGCATGCTTAATGTACAAACATCT---TGA 167428 Query 44305 CGATAAGCCTTC--ATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 | ||||| | | | |||| | | || ||| | |||||| ||||| || || Sbjct 167427 ACAGAAGCCACCAAAGGAAAGAGTAGT--TGAAATTATCACAGAGGCTGTAAAAATTGAG 167370 Query 44363 CAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATG 44422 | |||||| | || ||| | || || || | | || |||||| ||| ||| Sbjct 167369 AAGGAATTTTTAACTGACGCACTTCCAGTTAAGATGTTGGGCATGAATTGTGATTTAATG 167310 Query 44423 AACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACAC 44482 | || || || |||| |||| |||| |||| | ||| |||| |||||| | Sbjct 167309 ACTCAGTACATAGAATTTGTTGCTGATCATTTATTGGGTGAATTGGGACTTGATAAAGTC 167250 Query 44483 TATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAAC 44542 |||| | |||| || || ||||||||| |||||| | || ||||| |||||| Sbjct 167249 TATAATACCAAAAATCCATTCTCATTTATGGAATTTATTTCACTTGAGGGCAAGACAAAC 167190 Query 44543 TTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || ||| | ||||| |||||||| Sbjct 167189 TTCTTCGAACGAAAGGTTGGTGAATATCA 167161 >seq10553 Length=1873 Score = 172 bits (190), Expect = 4e-38 Identities = 273/390 (70%), Gaps = 6/390 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||||||||| ||||| |||| || | || ||||| ||| | |||| |||| Sbjct 1422 CCGAAAATTGTAAACGGTCCACAAATTTTGGACAAGTATGTTGGTGAGAGTGAAGCAAAT 1363 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || | | ||||| || || ||||||||| |||| | ||||| | || || | Sbjct 1362 ATCCGTAGACTTTTTGCGGATGCAGAAGAAGAAGAAAAGAGATTAGGTCCAAATAGCGGT 1303 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT---GGT 19605 | |||||||| ||| | |||||| | || || || ||||| |||||||| | | Sbjct 1302 CTCCACATTATCATATTCGATGAAATCGATGCTATTTGTAAATCTCGAGGTTCTGTGGCT 1243 Query 19606 GTAAA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| ||| || ||||| || ||||| |||||| | || | || | ||||||||| Sbjct 1242 GGAAATTCTGGCGTCCATGATACGGTTGTGAATCAATTATTGGCTAAGATCGACGGTGTT 1183 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| | ||||| ||||| || || || ||||| ||| ||| || | || ||| Sbjct 1182 GAACAATTAAATAACATTTTGGTCATCGGTATGACAAATCGACGTGACATGATTGACGAA 1123 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | ||||| ||| | |||||| | |||| |||||| ||| || ||||| | Sbjct 1122 GCTTTGATGCGACCTGGTAGATTGGAAGTTCAGATGGAAATTGGCTTGCCTAATGAACCT 1063 Query 19783 GGACGTGTGGAAATTTTAAACATACATACA 19812 ||| | || |||||||||| || |||||| Sbjct 1062 GGAAGAGTACAAATTTTAAATATTCATACA 1033 >seq933 Length=47053 Score = 95.1 bits (104), Expect = 1e-14 Identities = 246/368 (67%), Gaps = 14/368 (4%) Strand=Plus/Plus Query 47226 TTTTAGGACTTTATGAAA--AATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGG 47283 |||||||| ||||| || |||| || ||| ||||||| | || ||||| ||||| || Sbjct 35525 TTTTAGGA--TTATGGAAGAAATCTGGCAAATTATTATTCTTGGGATTAGATAATGCTGG 35582 Query 47284 AAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATT 47343 |||||| || | || |||||||| ||| | | | | | | ||| || ||| | Sbjct 35583 TAAAACGACACTTCTTCACATGCTTAAAGATGACAGATTAGCACAACATGTTCCAACACT 35642 Query 47344 ACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGG 47403 |||||||| || || |||| | || | || |||| |||||||||||||| Sbjct 35643 TCATCCGACATCAGAGGAACTGTCCATAGGAAATATGCGTTTTACAACATTTGATTTAGG 35702 Query 47404 AGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGT 47463 ||||| | ||||| ||| | ||||| | |||| |||| | || ||||| || || Sbjct 35703 TGGACATACGCAAGCTCGTCGTGTGTGGAAGGATTACTTTCCAGCTGTCGATGCAATTGT 35762 Query 47464 TTATATTGTAGACTGTGCA---GATTTGACTAGACTGACAG--AGGCAAAAATCGAATTC 47518 | | || | || |||| ||| | | | || ||| | || ||||||||||| Sbjct 35763 CTTTCTTATTGA---TGCATGGGATCGAAGTCG-CTTCCAGGAAAGC-AAAATCGAATTG 35817 Query 47519 GATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGGCAATAAA 47578 ||| | ||||||| || ||| ||| || ||| || | | ||||| |||||| Sbjct 35818 GATTCATTGTTAACGGACGAAGCTTTATCGAATTGTCCCGTTCTCATATTGGGGAATAAA 35877 Query 47579 ATCGACAA 47586 || ||||| Sbjct 35878 ATTGACAA 35885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397329935030125