Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq343 185 7e-42
seq296 125 6e-24
seq442 89.7 4e-13
>seq343
Length=103200
Score = 185 bits (204), Expect = 7e-42
Identities = 937/1471 (64%), Gaps = 52/1471 (4%)
Strand=Plus/Plus
Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465
|| || || || || ||||| ||||| | || || || || || || |||||||| ||
Sbjct 5011 TTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCA 5070
Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG---TAATTG 130522
||||| ||||| ||||| ||| ||| || ||| || || || ||||||
Sbjct 5071 GTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGG---ACGTTAATTTCCCATAATTG 5127
Query 130523 GGTTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580
|||| || || |||||| | | ||| || ||| || |||||||| || | || |
Sbjct 5128 GGTTCAGCTACATGAATAT--TAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGG 5185
Query 130581 CAGCCATGTCGAGCATG-GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639
||| ||| | || || || || || |||||| | || || |||| || |
Sbjct 5186 CAGACATTT-GAATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTT 5244
Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699
|| | | || || || |||| | || | ||| || || || ||||||| |||
Sbjct 5245 ATATCATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTC 5304
Query 130700 CGCATACTTTTATCGTACAATCCAAGCT--GTACAAGATCTTTTACCAAATGATTATTAA 130757
|||| | ||| | || ||| | | || ||| ||| || | | ||| | |||||
Sbjct 5305 TTCATATCGTCATCCCATAAACCACGTTCAGT-CAA-ATCCTTGATAAGATGGTGATTAA 5362
Query 130758 TGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAA 130817
| |||||| |||||| || || || | | |||| || || ||| | |||||||
Sbjct 5363 CAACTTGAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAA 5422
Query 130818 AGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATA 130877
|| || || || || || || || || || | ||| || ||||| ||| | ||| |
Sbjct 5423 AGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGA 5482
Query 130878 GAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG 130937
| ||||| || ||||| | | | |||||| || | | ||||||||||| | |
Sbjct 5483 GTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAAT 5542
Query 130938 AGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997
||| || | || | |||||||||| |||||| || ||||| | ||||
Sbjct 5543 CGGTGGGAGTC---TTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATC 5599
Query 130998 ATTCGAACGATTCGTAGATTCC---TTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAG 131054
||| | | || || ||| || | || | || ||| | ||||| |
Sbjct 5600 CATCGTAAGTCTCATATGGTCCCAATTGTTCT---GCTAATTCACAGCTGGACTCCAATG 5656
Query 131055 CTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGT 131114
| || |||||||| ||||| ||||||| |||||| | |||||||| ||| || |
Sbjct 5657 CACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCAT 5716
Query 131115 AAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTC 131174
| || | | |||| ||||||||||| ||||| | || || | |||| || | || |
Sbjct 5717 ATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGAC 5776
Query 131175 TATGTTTTAAATT--ACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTAT 131232
|||| | || || || || || ||| |||||| || | || ||| ||
Sbjct 5777 GATGTCTAAAGTTTGACCGTTTAGCTTC--TTCAACGGGATAGTAATTTACGTTAATAAT 5834
Query 131233 TTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACG- 131291
||| || ||||| | || |||| ||| || |||||||||| || ||| |
Sbjct 5835 TTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTC 5894
Query 131292 --TGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGC 131349
| | | ||| | || ||||| ||||| | ||||| || | ||||||||||||
Sbjct 5895 TCTTCGATTTT---GTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGC 5951
Query 131350 CGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGT 131409
||| || | | |||| || || ||||| | || ||||| | ||| ||
Sbjct 5952 AACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGT 6011
Query 131410 GCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCG 131468
|| | ||| |||||||| ||| || |||| ||||| |||| ||| || || |
Sbjct 6012 CCCAAGATTCTGTTGATTTGATTTCCGGTTG-CATGAATCCTTATACAGCATATAAGGTG 6070
Query 131469 TGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTG 131526
| || ||||| ||||||| ||||| || |||| | | | | | || | |||
Sbjct 6071 TACCAGTTTCTACTTGAGCCTCAATGATTG--CGAACCACAAATCTTGTGCCTTTACTTG 6128
Query 131527 ATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAA 131586
| | || || | ||| || ||| || | |||||| | || | |
Sbjct 6129 ACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAA--GTTTCACAAATTCCTC--AC 6184
Query 131587 CGAACTGTCCAAATTG----GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCT 131642
|| || | |||| | |||| | |||||||||| ||||||| | || |
Sbjct 6185 CGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAATGACCACATTTCATTGT 6244
Query 131643 GTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTT 131702
|||||| || ||| |||||||| || | ||| || || || |||| |||||||||
Sbjct 6245 TTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTC 6304
Query 131703 TTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762
| |||||| | || || |||| || |||| | ||| || ||||| || ||||||
Sbjct 6305 TGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCC 6364
Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGAC 131819
| ||||||||||| | ||| | |||||| || ||| || ||||| | ||||| ||
Sbjct 6365 AAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAAC 6424
Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGG 131850
| | | || |||||||| | ||||| ||
Sbjct 6425 GTGCGGTATTATTGTATACTCTTAACATTGG 6455
>seq296
Length=113092
Score = 125 bits (138), Expect = 6e-24
Identities = 176/243 (72%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 27007 TTTCATAATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065
||||| ||||| || ||||| || | || | |||||||| || ||||| ||||| ||
Sbjct 112842 TTTCAAAATTAATTTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGG 112901
Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125
|||||||||||||||| | || | ||||| | ||||| || ||| | || | ||||
Sbjct 112902 ATATTGTAGTCGCTCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGC 112961
Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185
||||| || || || | || ||||| || |||||| || | |||| | |||
Sbjct 112962 TGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTG 113021
Query 27186 TCTG-TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTG 27244
|||| |||| |||||||||| || || | ||| || |||| ||| || || || |||||
Sbjct 113022 TCTGATGGC-TCAACTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTG 113080
Query 27245 CAT 27247
|||
Sbjct 113081 CAT 113083
>seq442
Length=86436
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| || || || | || || |||||||| || ||||||||||||| | || |
Sbjct 25002 CGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCA 25061
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| | ||||| || || | || | |||||||||||| || || | || || |||
Sbjct 25062 TCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTA 25121
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211
|| ||||| || | |||| | ||||| | |||| || ||||| || || ||
Sbjct 25122 TCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGC-TCGACTTCGAGGGTAAT 25180
Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || ||||||| ||||| || ||||| |||||
Sbjct 25181 TGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424799619439800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |