Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq343 185 7e-42 seq296 125 6e-24 seq442 89.7 4e-13 >seq343 Length=103200 Score = 185 bits (204), Expect = 7e-42 Identities = 937/1471 (64%), Gaps = 52/1471 (4%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || || ||||| ||||| | || || || || || || |||||||| || Sbjct 5011 TTGTCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAGTAATACATTCCA 5070 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG---TAATTG 130522 ||||| ||||| ||||| ||| ||| || ||| || || || |||||| Sbjct 5071 GTTTTCAGTCCCATTTTCCATCCGTAAAAATGAATGG---ACGTTAATTTCCCATAATTG 5127 Query 130523 GGTTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580 |||| || || |||||| | | ||| || ||| || |||||||| || | || | Sbjct 5128 GGTTCAGCTACATGAATAT--TAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGG 5185 Query 130581 CAGCCATGTCGAGCATG-GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639 ||| ||| | || || || || || |||||| | || || |||| || | Sbjct 5186 CAGACATTT-GAATTTGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTT 5244 Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699 || | | || || || |||| | || | ||| || || || ||||||| ||| Sbjct 5245 ATATCATCTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTC 5304 Query 130700 CGCATACTTTTATCGTACAATCCAAGCT--GTACAAGATCTTTTACCAAATGATTATTAA 130757 |||| | ||| | || ||| | | || ||| ||| || | | ||| | ||||| Sbjct 5305 TTCATATCGTCATCCCATAAACCACGTTCAGT-CAA-ATCCTTGATAAGATGGTGATTAA 5362 Query 130758 TGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAA 130817 | |||||| |||||| || || || | | |||| || || ||| | ||||||| Sbjct 5363 CAACTTGAAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAA 5422 Query 130818 AGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATA 130877 || || || || || || || || || || | ||| || ||||| ||| | ||| | Sbjct 5423 AGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGA 5482 Query 130878 GAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG 130937 | ||||| || ||||| | | | |||||| || | | ||||||||||| | | Sbjct 5483 GTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAAT 5542 Query 130938 AGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997 ||| || | || | |||||||||| |||||| || ||||| | |||| Sbjct 5543 CGGTGGGAGTC---TTATCCCACATATCATATTGTAATACACCTTTTGACACCGGACATC 5599 Query 130998 ATTCGAACGATTCGTAGATTCC---TTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAG 131054 ||| | | || || ||| || | || | || ||| | ||||| | Sbjct 5600 CATCGTAAGTCTCATATGGTCCCAATTGTTCT---GCTAATTCACAGCTGGACTCCAATG 5656 Query 131055 CTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGT 131114 | || |||||||| ||||| ||||||| |||||| | |||||||| ||| || | Sbjct 5657 CACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTCGCTTCGTTAGATTCAT 5716 Query 131115 AAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTC 131174 | || | | |||| ||||||||||| ||||| | || || | |||| || | || | Sbjct 5717 ATGGCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGAC 5776 Query 131175 TATGTTTTAAATT--ACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTAT 131232 |||| | || || || || || ||| |||||| || | || ||| || Sbjct 5777 GATGTCTAAAGTTTGACCGTTTAGCTTC--TTCAACGGGATAGTAATTTACGTTAATAAT 5834 Query 131233 TTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACG- 131291 ||| || ||||| | || |||| ||| || |||||||||| || ||| | Sbjct 5835 TTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAATTTGTGAAAGTCATATTC 5894 Query 131292 --TGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGC 131349 | | | ||| | || ||||| ||||| | ||||| || | |||||||||||| Sbjct 5895 TCTTCGATTTT---GTTTGACAAACATATTTAAAGCAATTGATGCTAAATTACAAACTGC 5951 Query 131350 CGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGT 131409 ||| || | | |||| || || ||||| | || ||||| | ||| || Sbjct 5952 AACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACGTATTGT 6011 Query 131410 GCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCG 131468 || | ||| |||||||| ||| || |||| ||||| |||| ||| || || | Sbjct 6012 CCCAAGATTCTGTTGATTTGATTTCCGGTTG-CATGAATCCTTATACAGCATATAAGGTG 6070 Query 131469 TGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTG 131526 | || ||||| ||||||| ||||| || |||| | | | | | || | ||| Sbjct 6071 TACCAGTTTCTACTTGAGCCTCAATGATTG--CGAACCACAAATCTTGTGCCTTTACTTG 6128 Query 131527 ATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAA 131586 | | || || | ||| || ||| || | |||||| | || | | Sbjct 6129 ACGAATATACCTTCCTTCTGCTTCATAGCCTTCATAAA--GTTTCACAAATTCCTC--AC 6184 Query 131587 CGAACTGTCCAAATTG----GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCT 131642 || || | |||| | |||| | |||||||||| ||||||| | || | Sbjct 6185 CGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAATGACCACATTTCATTGT 6244 Query 131643 GTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTT 131702 |||||| || ||| |||||||| || | ||| || || || |||| ||||||||| Sbjct 6245 TTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTC 6304 Query 131703 TTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762 | |||||| | || || |||| || |||| | ||| || ||||| || |||||| Sbjct 6305 TGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCC 6364 Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGAC 131819 | ||||||||||| | ||| | |||||| || ||| || ||||| | ||||| || Sbjct 6365 AAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAAC 6424 Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGG 131850 | | | || |||||||| | ||||| || Sbjct 6425 GTGCGGTATTATTGTATACTCTTAACATTGG 6455 >seq296 Length=113092 Score = 125 bits (138), Expect = 6e-24 Identities = 176/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 27007 TTTCATAATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065 ||||| ||||| || ||||| || | || | |||||||| || ||||| ||||| || Sbjct 112842 TTTCAAAATTAATTTCCTCCACGAAGACGAAGAACCAAATGCAATGTAGATTCTTTCTGG 112901 Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 |||||||||||||||| | || | ||||| | ||||| || ||| | || | |||| Sbjct 112902 ATATTGTAGTCGCTCAATGTACGACCATCTTCCAATTGTTTTCCTGCGAAGATCAAACGC 112961 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 ||||| || || || | || ||||| || |||||| || | |||| | ||| Sbjct 112962 TGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTG 113021 Query 27186 TCTG-TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTG 27244 |||| |||| |||||||||| || || | ||| || |||| ||| || || || ||||| Sbjct 113022 TCTGATGGC-TCAACTTCTAATGTGATGGTTTTTCCTGTCAAAGTCTTGACGAAAATTTG 113080 Query 27245 CAT 27247 ||| Sbjct 113081 CAT 113083 >seq442 Length=86436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || || || | || || |||||||| || ||||||||||||| | || | Sbjct 25002 CGCAACACTAAGTGAAGTGTTGACTCTTTTTGGATGTTGTAGTCGCTCAATGTACGACCA 25061 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || | || | |||||||||||| || || | || || ||| Sbjct 25062 TCTTCTAATTGTTTTCCAGCAAAGATCAAACGCTGTTGATCTGGTGGAATTCCTTCCTTA 25121 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || ||||| || | |||| | ||||| | |||| || ||||| || || || Sbjct 25122 TCTTGAATCTTAGCCTTGACATTTTCAATCGTGTCAGATGGC-TCGACTTCGAGGGTAAT 25180 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||||| ||||| || ||||| ||||| Sbjct 25181 TGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 25216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424799619439800