Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq343 158 2e-33 seq10 102 1e-16 seq782 91.5 2e-13 >seq343 Length=103200 Score = 158 bits (174), Expect = 2e-33 Identities = 453/685 (66%), Gaps = 24/685 (4%) Strand=Plus/Plus Query 110718 TTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 110777 ||||||| |||||||||| |||||||||||||| || || || || || ||||| |||| Sbjct 5408 TTGTGTAAGGTTCAAAGCTCTCATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCA 5467 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 ||||||| || || || || || ||||| || || || ||| || ||| | | Sbjct 5468 TTGGTGCAATTAAGAGTGAATTTCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTT 5527 Query 110838 CCCAGTCGTAGTTGAGCTTGGTTTCAC-CTT--CCCACATGTCAAACTGAAGCACCCCTT 110894 |||| || | | | ||| | ||| ||||||| ||| | || | || |||| Sbjct 5528 CCCAATCCCAC---AAATCGGTGGGAGTCTTATCCCACATATCATATTGTAATACACCTT 5584 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACC---TTGGGCTTCAGCCAATTCAC 110951 ||| | ||| | || || | || ||||| | || ||| ||| || ||||||| Sbjct 5585 TTGACACCGGACATCCATCGTAAGTCTCATATGGTCCCAATTG---TTCTGCTAATTCAC 5641 Query 110952 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGG 111011 |||| | ||||| | | | ||| || |||||||| || | ||| | | || | Sbjct 5642 AGCTGGACTCCAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTCG 5701 Query 111012 CTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACA 111070 |||| | || ||| ||| | | || ||||||||| |||| || | |||||||| Sbjct 5702 CTTCGTTAGATTCATATG-GCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACT 5760 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCGCAGTC-TCAACGGGATAA 111127 || | |||||||| | |||| | || ||| ||| || || ||||||||||| Sbjct 5761 CCAATTCCAATAGGACGATGTCTAAAGTTTGACCGTTTAGC---TTCTTCAACGGGATAG 5817 Query 111128 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGT 111187 ||||| || ||| | | || | ||| | || || || ||||| | ||| | | | Sbjct 5818 TAATTTACGTTAATAATTTTATTCAAATTCCTTGTGACTATTTTTGTAACTTCCTTCAAT 5877 Query 111188 TTTTCATAATCAAAAGTGCGAGTC--TCTTCATTGACATACTTTGGAAGGGCGATTGATG 111245 || | | | ||| | | | || | || |||||| || | | || ||||||| Sbjct 5878 TTGTGAAAGTCATA--TTCTCTTCGATTTTGTTTGACAAACATATTTAAAGCAATTGATG 5935 Query 111246 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGT 111305 | ||||| ||||| || ||||||||| || || | || ||||| |||||||| | Sbjct 5936 CTAAATTACAAACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATAAAT 5995 Query 111306 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGT 111365 | |||| || ||||| | ||||| ||| || ||| |||||| | |||||| | Sbjct 5996 TCGAACAACGTATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTAT 6055 Query 111366 AGAGCATGTAGGGCGTCCCCGTCTC 111390 | ||||| || || || || || || Sbjct 6056 ACAGCATATAAGGTGTACCAGTTTC 6080 >seq10 Length=552578 Score = 102 bits (112), Expect = 1e-16 Identities = 258/387 (67%), Gaps = 8/387 (2%) Strand=Plus/Plus Query 9162 TATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGGAG 9221 ||||| || ||| | ||||| ||| ||| || || ||| | ||||||| ||| || Sbjct 300330 TATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAG 300389 Query 9222 ACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 ||||| ||||| ||| | ||| || | ||| | || || | | | ||| || Sbjct 300390 ACACCATTCTATCCAAGAA--GTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCA 300447 Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339 | | ||||||||| || ||||||| ||| ||| || || || | || || |||| Sbjct 300448 TTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATG 300507 Query 9340 AATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACC-GAGG-GTATCAAACA 9397 |||| || || |||| | | | || || || | ||| |||||| || || | || | Sbjct 300508 AATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAA 300567 Query 9398 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 |||| || | || | || ||| | ||| | ||||| | || | | | ||||| Sbjct 300568 TTTCATTAAAGC--AACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTG 300625 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 9517 |||||| || |||||||| || |||||||||||| | ||| | ||||| || | | || Sbjct 300626 GGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGA 300685 Query 9518 CGAATATGTAGTAGCAACGGGTGAGAC 9544 || | |||| | || || || || || Sbjct 300686 AGATTTTGTAATTGCTACAGGCGAAAC 300712 >seq782 Length=54866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 246/368 (67%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 || ||||| ||||| || | ||||| || ||||||||||| | | |||| | ||| | Sbjct 42923 CCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGAATAATTGGAACATAATAT 42864 Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 181745 || || ||||| | || || ||||| |||| || | || ||||| | ||| Sbjct 42863 TCAGGCTCAATACGCTGATTGTCTTCATCCAAAAAGTTAAGCAAAGGATCATCATGTGGA 42804 Query 181746 TCAAAGATCTTGCGAGCCTCCTTG-GTAAGTTTTGTGAAGATATACCTCGT--TTG-AGA 181801 | ||||| | ||||| | | | | ||| | ||||| ||||| | | ||| ||| Sbjct 42803 TGGAAGATGTGACGAGC-TAATGGCGAAAGCATCGTGAAAATATAACGAGGACTTGCAGA 42745 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 | ||||| || ||| | | |||||||||||| |||||| || | ||| | ||||| Sbjct 42744 A---TCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTAGGTTGAAGCAAATTAAT 42688 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGC-AAGGGACACTT 181920 ||||| || ||| | | ||||| ||||| || ||| | || ||| || |||| Sbjct 42687 ATTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGTA-CTGCAAAGTGAAACTT 42629 Query 181921 CACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTT 181980 |||| || || || || || || ||||| | | |||||||| || || || | | Sbjct 42628 CACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCAACTGAGCAACTTTAACCT 42569 Query 181981 CATCTTTG 181988 | | |||| Sbjct 42568 CCTTTTTG 42561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627827693340000