Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq343 141 1e-28 seq10 105 8e-18 seq782 104 3e-17 >seq343 Length=103200 Score = 141 bits (156), Expect = 1e-28 Identities = 458/699 (66%), Gaps = 34/699 (5%) Strand=Plus/Minus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || ||||| || ||||||||||| || ||||| || || || | || |||| || Sbjct 6091 AGGCTCAAGTAGAAACTGGTACACCTTATATGCTGTATAAGGATTCATGCAACCGGAAAT 6032 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGA----GTTCCAATCTCTGTACAGAAATCTTG 105019 |||||| ||||| | || || ||| | |||| ||| | ||||| ||||| | Sbjct 6031 CAAATCAACAGAATCTTGG---GA-CAATACGTTGTTCGAATTTATGTACGGAAATAGTA 5976 Query 105020 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 105079 ||| | || || ||||| || || ||||| | |||||||| ||| | || Sbjct 5975 CAATATTCAAGTAAGGATGAAGTTGCAGTTTGTAATTTAGCATCAATTGCTTT----AAA 5920 Query 105080 TATGTGGATC---CAGAGACAAAGACATT-TGATTATGAAAAACTCCACGAAGTTACGAA 105135 ||||| || || | | |||| | | ||| | | | ||| | | |||||||| || Sbjct 5919 TATGTTTGTCAAACAAAATCGAAGAGAATATGACTTTCACAAATTGAAGGAAGTTACAAA 5860 Query 105136 AACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 105195 || ||||| | || | || | | ||||| | ||||| || |||||||| || Sbjct 5859 AATAGTCACAAGGAATTTGAATAAAATTATTAACGTAAATTACTATCCCGTTGAAGAAGC 5800 Query 105196 TCGTAAA---TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252 | ||| || || | ||||| ||||| ||||| | || ||||| || | || || Sbjct 5799 T---AAACGGTCAAACTTTAGACATCGTCCTATTGGAATTGGAGTTCAAGGATTGGCAGA 5743 Query 105253 TGTATTCATTCTTTGTCGCCACGC-ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGC 105311 || || ||| || | | || || ||| || |||||||||| | | ||| | Sbjct 5742 TGCTTTTATT-TTGATGAGAATGCCATATGAATCTAACGAAGCGAAAAATTTAAATCAAC 5684 Query 105312 GCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG--T 105369 |||||||| || || ||| | | || | ||| | || | || || ||||| | Sbjct 5683 AAATATTTGAAACAATTTATTATGGTGCATTGGAGTCCAGCTGTGAATTAGCAGAACAAT 5624 Query 105370 TGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA 105429 || || |||||||| || | || || | ||| | ||| |||| || | |||| ||| Sbjct 5623 TG--GGACCATATGAGACTTACGATGGATGTCCGGTGTCAAAAGGTGTATTACAATATGA 5566 Query 105430 TATGTGGGAAGGTGAGA---CCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT 105486 ||||||||| | ||| ||| | | || ||||||||||| || ||| || Sbjct 5565 TATGTGGGA---TAAGACTCCCACCGATTTGTGGGATTGGGAAGCTCTAAAAGAAAAAAT 5509 Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546 || || ||||| || || ||| | || || |||||||| ||||| || || || Sbjct 5508 TAAAAAGTTTGGTCTCCGAAATTCACTCTTAATTGCACCAATGCCGACAGCATCAACTGC 5449 Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 || || |||||||||||||| |||||||||| ||||| Sbjct 5448 TCAGATTTTGGGTAATAATGAGAGCTTTGAACCTTACAC 5410 >seq10 Length=552578 Score = 105 bits (116), Expect = 8e-18 Identities = 259/387 (67%), Gaps = 8/387 (2%) Strand=Plus/Plus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 || || || || || || || ||| ||| ||||| ||||||||||||| ||| || Sbjct 300330 TATCAGGCATCTACATCAGAATTGTATGGAAAAGTAGTGGAAACTCCACAAACTGAGAAG 300389 Query 7298 ACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7355 ||||| ||||| ||| | ||| || | ||| | || || | | | ||| || Sbjct 300390 ACACCATTCTATCCAAGAA--GTCCATATGCAGTAGCTAAACTTTATGGATACTGGATCA 300447 Query 7356 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7415 | | ||||||||| || ||||||| ||| ||| || || || | || || |||| Sbjct 300448 TTATAAATTACCGTGAAGCTTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATG 300507 Query 7416 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGG-GTATCAAACA 7473 |||| || || |||| | | | || || |||| ||| |||||| || || | || | Sbjct 300508 AATCGCCAAGGAGAGGAGAAAATTTCGTTACAAGGAAAATTACCCGATCAGTCGCTAAAA 300567 Query 7474 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTG 7533 |||| || | || | || ||| | ||| | ||||| | || | | ||||| Sbjct 300568 TTTCATTAAAGC--AACAAGAATTCTTGGAACTTGGTAATCTTGACTCAAAACGTGATTG 300625 Query 7534 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7593 |||||| || |||||||| || |||||||||||| | ||| | ||||| || | | || Sbjct 300626 GGGTCATGCAAAGGACTACGTGGAAGCTATGTGGATGATGTTGCAACAGGATCAGCCAGA 300685 Query 7594 CGAATATGTAGTAGCAACGGGTGAGAC 7620 || | |||| | || || || || || Sbjct 300686 AGATTTTGTAATTGCTACAGGCGAAAC 300712 >seq782 Length=54866 Score = 104 bits (114), Expect = 3e-17 Identities = 280/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || ||||| ||||| || | || || || |||||||| || | |||| | || | Sbjct 42923 CCAGTACCAATACCTTCAGCGCCATTTACAAGAACCATTGGAATAATTGGAACATAATAT 42864 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 168397 || |||||||| | || || ||||||||| |||| || | |||||||| ||| Sbjct 42863 TCAGGCTCAATACGCTGATTGTCTTCATCCAAAAAGTTAAGCAAAGGATCATCATGTGGA 42804 Query 168398 TCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGT--TTG-AGAC 168454 | ||||| | || || | | ||| | || || ||||| | | ||| ||| Sbjct 42803 TGGAAGATGTGACGAGCTAATGGCGAAAGCATCGTGAAAATATAACGAGGACTTGCAGA- 42745 Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 ||| || || ||| | | ||||||||||||||||||| || | ||| | ||| ||| Sbjct 42744 --ATCTTTTCCTCCCGTTAAACGCGTACCAAACTGACCATTAGGTTGAAGCAAATTAATA 42687 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGC-GAGAGAGACTTC 168573 ||||| || | || | | ||||| || ||||| || | || || || ||||| Sbjct 42686 TTGTTACTTCCGACATAATTTTGAGCCAAATTAACAATTGT-ACTGCAAAGTGAAACTTC 42628 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 ||| || || || ||||||| || || || | | |||||||| || ||||| | ||| Sbjct 42627 ACCATGATGATATGCACTCTGTTCGGCAACGGAACCAGCCAACTGAGCAACTTTAACCTC 42568 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 | ||| ||| | ||||||| | || | || ||||| |||||| | ||| Sbjct 42567 CTTTTTGTCATTACGTTTAAAGCATGTAAAAATGATTTTACGTTGACCAGGCTTAAAACC 42508 Query 168694 ATC 168696 ||| Sbjct 42507 ATC 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583071057971000