Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10 105 7e-18 seq782 86.0 7e-12 >seq10 Length=552578 Score = 105 bits (116), Expect = 7e-18 Identities = 272/412 (66%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||| || || | ||| | || || || || ||||| ||||| || ||||| Sbjct 300735 CAACAAATTCTCGTACACTGCGAGTTTCGCCTGTAGCAATTACAAAATCTTCTGGCTGAT 300676 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 |||||| | ||| | |||||| || || ||||| |||| || |||||||| || || | Sbjct 300675 CCTGTTGCAACATCATCCACATAGCTTCCACGTAGTCCTTTGCATGACCCCAATCACGTT 300616 Query 159059 TGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCAC---TCAGCCAGAC 159115 | | || | || || || || | || || | |||| | | ||| ||| Sbjct 300615 TTGAGTCAAGATTACCAAGTTCCAAGAATTCTTGTTGCTTTAATGAAATTTTAGC--GAC 300558 Query 159116 CGAGCGTG--ATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAA 159173 || || | || || | || || || | | |||| | || | ||| ||||| ||||| Sbjct 300557 TGATCGGGTAATTTTCCTTGTAACGAAATTTTCTCCTCTCCTTGGCGATTCATGATTAAA 300498 Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233 | ||| || |||| || ||| || | || ||||||||| || | |||||||| Sbjct 300497 TAAAATACCATTACATGCATACATACCGTAAGCTTCACGGTAATTTATAATGATCCAGTA 300438 Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 |||| | || || | || | |||||||| | ||||| ||||||||| |||| |||| Sbjct 300437 TCCATAAAGTTTAGCTACTGCATATGGACTTCTTGGATAGAATGGTGTCTTCTCAGTTTG 300378 Query 159294 AATTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAAT 159345 | |||| || |||||| ||| ||| || |||||||||||| Sbjct 300377 TGGAGTTTCCACTACTTTTCCATACAATTCTGATGTAGATGCCTGATAAAAT 300326 >seq782 Length=54866 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||||||| ||| || || || | | ||||||||| || || Sbjct 42770 GTGAAAATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGA 42711 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | | || | ||||| || ||| | ||||||||||| || ||| Sbjct 42710 CCATTAGGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACA 42651 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || |||| || | |||||||| ||||| || |||| || || ||| | || Sbjct 42650 ATTGTACTGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCA 42591 Query 117485 GCCAGCTGAGCCACCTT 117501 |||| |||||| || || Sbjct 42590 GCCAACTGAGCAACTTT 42574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547037983795000