Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq10 105 7e-18
seq782 86.0 7e-12
>seq10
Length=552578
Score = 105 bits (116), Expect = 7e-18
Identities = 272/412 (66%), Gaps = 7/412 (2%)
Strand=Plus/Minus
Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998
||| ||| || || | ||| | || || || || ||||| ||||| || |||||
Sbjct 300735 CAACAAATTCTCGTACACTGCGAGTTTCGCCTGTAGCAATTACAAAATCTTCTGGCTGAT 300676
Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058
|||||| | ||| | |||||| || || ||||| |||| || |||||||| || || |
Sbjct 300675 CCTGTTGCAACATCATCCACATAGCTTCCACGTAGTCCTTTGCATGACCCCAATCACGTT 300616
Query 159059 TGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCAC---TCAGCCAGAC 159115
| | || | || || || || | || || | |||| | | ||| |||
Sbjct 300615 TTGAGTCAAGATTACCAAGTTCCAAGAATTCTTGTTGCTTTAATGAAATTTTAGC--GAC 300558
Query 159116 CGAGCGTG--ATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAA 159173
|| || | || || | || || || | | |||| | || | ||| ||||| |||||
Sbjct 300557 TGATCGGGTAATTTTCCTTGTAACGAAATTTTCTCCTCTCCTTGGCGATTCATGATTAAA 300498
Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233
| ||| || |||| || ||| || | || ||||||||| || | ||||||||
Sbjct 300497 TAAAATACCATTACATGCATACATACCGTAAGCTTCACGGTAATTTATAATGATCCAGTA 300438
Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293
|||| | || || | || | |||||||| | ||||| ||||||||| |||| ||||
Sbjct 300437 TCCATAAAGTTTAGCTACTGCATATGGACTTCTTGGATAGAATGGTGTCTTCTCAGTTTG 300378
Query 159294 AATTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAAT 159345
| |||| || |||||| ||| ||| || ||||||||||||
Sbjct 300377 TGGAGTTTCCACTACTTTTCCATACAATTCTGATGTAGATGCCTGATAAAAT 300326
>seq782
Length=54866
Score = 86.0 bits (94), Expect = 7e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| ||||||| ||| || || || | | ||||||||| || ||
Sbjct 42770 GTGAAAATATAACGAGGACTTGCAGAATCTTTTCCTCCCGTTAAACGCGTACCAAACTGA 42711
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | | || | ||||| || ||| | ||||||||||| || |||
Sbjct 42710 CCATTAGGTTGAAGCAAATTAATATTGTTACTTCCGACATAATTTTGAGCCAAATTAACA 42651
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| |||| || | |||||||| ||||| || |||| || || ||| | ||
Sbjct 42650 ATTGTACTGCAAAGTGAAACTTCACCATGATGATATGCACTCTGTTCGGCAACGGAACCA 42591
Query 117485 GCCAGCTGAGCCACCTT 117501
|||| |||||| || ||
Sbjct 42590 GCCAACTGAGCAACTTT 42574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547037983795000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |