Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq442 147 2e-30 seq296 123 2e-23 seq726 105 6e-18 >seq442 Length=86436 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||||||||| || || ||||| |||| || ||| | ||||| || ||||| || Sbjct 25223 ATACACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA 25164 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 || || ||| ||||||| | ||||| || |||||||| || ||||| || ||||| Sbjct 25163 GCCATCTGACACGATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACC 25104 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 |||||||||||||| || | || || |||||||| ||||| || || | ||| Sbjct 25103 AGATCAACAGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACATTGAGCGA 25044 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| ||||| ||||| || | || || || ||||| | || ||||| Sbjct 25043 CTACAACATCCAAAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGTGGTGG 24990 >seq296 Length=113092 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||| |||| || || | || || | ||||| || || || Sbjct 113084 CATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATC 113025 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || ||| || |||||||||||||| || ||||| || || Sbjct 113024 AGACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCA 112965 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || |||||||||||||| || || | ||| ||||| Sbjct 112964 ACAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAA 112905 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || || || ||||||||| | ||| | || || || Sbjct 112904 TATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG 112857 >seq726 Length=60972 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 135505 AGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTC 135564 |||||| |||||||| |||||| |||| ||||||||||| |||||||| || |||||| | Sbjct 19459 AGAAGGTAAAATGCATGGATTTTTGCGAATGTATTGGGCTAAAAAGATTTTAGAATGGAC 19400 Query 135565 TGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624 ||| |||| | ||| | || || ||||| | ||| |||||| || | | | || Sbjct 19399 AGCAACGCCAGAAGATGGTCTTGAAACTGCAATCTATTTAAATGATCGCTTTAATCTTGA 19340 Query 135625 TGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATT 135667 ||| | ||| | || ||||| || || || |||||| |||| Sbjct 19339 TGGTAGAGATCCGAACGGCTATGTGGGCTGCATGTGGAGTATT 19297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434776915608000