Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq442 147 2e-30
seq296 123 2e-23
seq726 105 6e-18
>seq442
Length=86436
Score = 147 bits (162), Expect = 2e-30
Identities = 173/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040
|||| |||||||||| || || ||||| |||| || ||| | ||||| || ||||| ||
Sbjct 25223 ATACACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA 25164
Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100
|| || ||| ||||||| | ||||| || |||||||| || ||||| || |||||
Sbjct 25163 GCCATCTGACACGATTGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACC 25104
Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160
|||||||||||||| || | || || |||||||| ||||| || || | |||
Sbjct 25103 AGATCAACAGCGTTTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACATTGAGCGA 25044
Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||| ||||| ||||| || | || || || ||||| | || |||||
Sbjct 25043 CTACAACATCCAAAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGTGGTGG 24990
>seq296
Length=113092
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || ||| |||| || || | || || | ||||| || || ||
Sbjct 113084 CATGCAAATTTTCGTCAAGACTTTGACAGGAAAAACCATCACATTAGAAGTTGAGCCATC 113025
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | || || ||| || |||||||||||||| || ||||| || ||
Sbjct 113024 AGACACAATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGACCA 112965
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||||| || | ||| || |||||||||||||| || || | ||| |||||
Sbjct 112964 ACAGCGTTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGTACATTGAGCGACTACAA 112905
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || || || || || || ||||||||| | ||| | || || ||
Sbjct 112904 TATCCAGAAAGAATCTACATTGCATTTGGTTCTTCGTCTTCGTGGAGG 112857
>seq726
Length=60972
Score = 105 bits (116), Expect = 6e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 135505 AGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTC 135564
|||||| |||||||| |||||| |||| ||||||||||| |||||||| || |||||| |
Sbjct 19459 AGAAGGTAAAATGCATGGATTTTTGCGAATGTATTGGGCTAAAAAGATTTTAGAATGGAC 19400
Query 135565 TGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624
||| |||| | ||| | || || ||||| | ||| |||||| || | | | ||
Sbjct 19399 AGCAACGCCAGAAGATGGTCTTGAAACTGCAATCTATTTAAATGATCGCTTTAATCTTGA 19340
Query 135625 TGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATT 135667
||| | ||| | || ||||| || || || |||||| ||||
Sbjct 19339 TGGTAGAGATCCGAACGGCTATGTGGGCTGCATGTGGAGTATT 19297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434776915608000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |