Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq296 149 1e-30 seq2577 104 6e-17 seq726 100 7e-16 >seq296 Length=113092 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| |||| |||||| ||| ||| || | |||||||| | || || || Sbjct 112887 GTAGATTCTTTCTGGATATTGTAGTCGCTCAATGTACGACCATCTTCCAATTGTTTTCCT 112946 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | || |||||||| || ||||| ||||| ||||||||||||||| ||| Sbjct 112947 GCGAAGATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTT 113006 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || |||||||| | || || ||||| ||||| || || || |||||||| Sbjct 113007 ACATTTTCAATTGTGTCTGATGGCTCAACTTCTAATGTGATGGTTTTTCCTGTCAAAGTC 113066 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 113067 TTGACGAAAATTTGCAT 113083 >seq2577 Length=13500 Score = 104 bits (114), Expect = 6e-17 Identities = 131/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| ||||||| || | |||| || || || ||| |||| ||||| || | ||||| Sbjct 1663 CCAAATTTACAATGTAGTAGTTACAGCTCACGCTTTTATTATAATTTTTTTCATAGTTAT 1722 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || || | || || || || || |||||| | ||||||||||| | || ||||| || Sbjct 1723 ACCAATTTTAATTGGAGGCTTTGGTAATTGACTAGTTCCTTTAATACTAGGAGCTCCAGA 1782 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATTT 7728 ||| || || || | | || ||||||||||||||| | || || ||||| |||| || Sbjct 1783 TATAGCATTCCCCCGAATAAATAATATAAGTTTTTGACTTCTTCCACCTTCTCTTACTT 1841 Score = 100 bits (110), Expect = 7e-16 Identities = 82/97 (85%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||||||||| ||||||||||||||||| ||||| || ||||| |||| Sbjct 2236 TTCTGGGTGACCAAAAAATCAAAATAAATGTTGATAAAGAATAGGGTCTCCTCCCCCTGC 2177 Query 370732 TGGATC-AAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 ||| || ||||||| | ||||| ||||||| ||| || Sbjct 2176 TGGGTCGAAAAAAGAT-GTATTTAAATTTCGATCTGT 2141 >seq726 Length=60972 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||| |||||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 55215 GAAGATTTGACCGTCAGTAATGGAGATGACATTGGTTGGAATGTAAGCTGAGACATCACC 55156 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | || || ||||| |||| ||| || ||||| Sbjct 55155 AGCTTGTGTTTCAATGACTGGCAAGGCAGTTAATGAGCCGCCACC 55111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192133556061350