Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07]
26,025 sequences; 213,462,749 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq119 284 1e-71
seq6 89.7 4e-13
>seq119
Length=197918
Score = 284 bits (314), Expect = 1e-71
Identities = 546/798 (68%), Gaps = 18/798 (2%)
Strand=Plus/Plus
Query 4280 TTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGT 4339
||||||||| || || ||||| || | |||||| ||||||||| || ||||| |
Sbjct 167181 TTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTT 167240
Query 4340 TGCGTTGTAATGTTTTTCA---CACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396
| || || ||| ||| | | | | | ||| ||| | ||||| ||||||||
Sbjct 167241 GGTATTATAGACTTTATCAAGTCCCAATTCACC--CAATAAAT-GATCAGCAACAAATTC 167297
Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGT 4456
||| ||||| |||| | || || || || || | | | || || || |||| ||
Sbjct 167298 TATGTACTGAGTCATTAAATCACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGT 167357
Query 4457 CAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGA 4516
||||| || | || || |||| || |||||||| || || || | | || || |
Sbjct 167358 TAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATTTCAACTACTCTTTCCTTTGG 167417
Query 4517 TGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTC 4576
||| || | | | | | | ||| ||| || ||||| |||| ||| | ||||||||
Sbjct 167418 TGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTC 167477
Query 4577 TCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCA 4636
||| ||| ||||| || ||||| || || || |||||||| |||||||| |||| |||
Sbjct 167478 TCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCA 167537
Query 4637 AAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAA 4696
||||||||| ||||| ||| |||||| || ||||| || || ||||| || | |
Sbjct 167538 AAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAAC 167597
Query 4697 TCGGGACCCGAACGAGCTGGCTTTGT--CTTTA-ATCCATTTTAATGCCCAGTTAGCTTT 4753
||| || || | | || || | || | ||||| ||||| ||||||| ||| ||
Sbjct 167598 TCGTTCACCAAA---GTTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTT 167654
Query 4754 TTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT---TTACTTTTTTCAAATGG 4810
|||||||| || |||| ||| | || || || ||||| | || | | ||
Sbjct 167655 CTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAGAAGTCACGCTGCTT---TGC 167711
Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870
||| ||||||||| || |||| || ||||| || || |||| |||||| |||||
Sbjct 167712 ATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGC 167771
Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTC 4930
||| || ||||| || ||| ||| |||||||| ||||||||||| | || || | ||
Sbjct 167772 AATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTC 167831
Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990
| ||| || || ||||| || || ||| || ||||| || || || ||||| || ||
Sbjct 167832 AATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGAT 167891
Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
||| | | || | ||| || || ||||||| || |||||| | |||||| ||
Sbjct 167892 AAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGAC 167951
Query 5051 TTCTTCAACAGTCCAAAA 5068
||| || || ||||| ||
Sbjct 167952 TTCCTCGACTGTCCAGAA 167969
>seq6
Length=649598
Score = 89.7 bits (98), Expect = 4e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 31770 TAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTA 31829
|||||||||| || || |||||| | || ||| || || |||||||| || ||
Sbjct 425283 TAGTTAAAACAGACATCCAAATTGAACTTCCAGAAGGCTGTTATGGACGAATTGCACCAC 425342
Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889
| |||||||| |||| ||| | || || || || ||||| || ||| |||| |||||
Sbjct 425343 GTTCTGGATTAGCAGCAAAAAATTTCATTGATGTTGGTGCTGGAGTTGTAGACGAAGACT 425402
Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921
|||||||||| | || |||| ||||||||
Sbjct 425403 ATAGAGGAAATTTAGGTGTTGTCATGTTTAAT 425434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426914148541325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |