Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq119 284 1e-71 seq6 89.7 4e-13 >seq119 Length=197918 Score = 284 bits (314), Expect = 1e-71 Identities = 546/798 (68%), Gaps = 18/798 (2%) Strand=Plus/Plus Query 4280 TTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGT 4339 ||||||||| || || ||||| || | |||||| ||||||||| || ||||| | Sbjct 167181 TTCGAAGAAGTTTGTCTTGCCCTCAAGTGAAATAAATTCCATAAATGAGAATGGATTTTT 167240 Query 4340 TGCGTTGTAATGTTTTTCA---CACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 | || || ||| ||| | | | | | ||| ||| | ||||| |||||||| Sbjct 167241 GGTATTATAGACTTTATCAAGTCCCAATTCACC--CAATAAAT-GATCAGCAACAAATTC 167297 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGT 4456 ||| ||||| |||| | || || || || || | | | || || || |||| || Sbjct 167298 TATGTACTGAGTCATTAAATCACAATTCATGCCCAACATCTTAACTGGAAGTGCGTCAGT 167357 Query 4457 CAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGA 4516 ||||| || | || || |||| || |||||||| || || || | | || || | Sbjct 167358 TAAAAATTCCTTCTCAATTTTTACAGCCTCTGTGATAATTTCAACTACTCTTTCCTTTGG 167417 Query 4517 TGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTC 4576 ||| || | | | | | | ||| ||| || ||||| |||| ||| | |||||||| Sbjct 167418 TGGCTTCTGTTCAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTC 167477 Query 4577 TCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCA 4636 ||| ||| ||||| || ||||| || || || |||||||| |||||||| |||| ||| Sbjct 167478 TCTCGAAATAAGTTCATTTGAAAATGTCAACCCTGGCATTAATCCTCTCTTCTTAATCCA 167537 Query 4637 AAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAA 4696 ||||||||| ||||| ||| |||||| || ||||| || || ||||| || | | Sbjct 167538 AAATATAGCTGCAAAGCTACCACTAAAGAAAATCCCTTCGACAGCTGCAAAAGCAATAAC 167597 Query 4697 TCGGGACCCGAACGAGCTGGCTTTGT--CTTTA-ATCCATTTTAATGCCCAGTTAGCTTT 4753 ||| || || | | || || | || | ||||| ||||| ||||||| ||| || Sbjct 167598 TCGTTCACCAAA---GTTTGCATTCTTGCTGGATATCCAATTTAAAGCCCAGTCAGCCTT 167654 Query 4754 TTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT---TTACTTTTTTCAAATGG 4810 |||||||| || |||| ||| | || || || ||||| | || | | || Sbjct 167655 CTTCTTAACACATGGAAGTGTCTCAATTGCATTGAATAAGAAGTCACGCTGCTT---TGC 167711 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| ||||||||| || |||| || ||||| || || |||| |||||| ||||| Sbjct 167712 ATCTCTAATATAAGTTTCAATTAATATTGAGTACATCTCCGAGTGTACATTTTCCATAGC 167771 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTC 4930 ||| || ||||| || ||| ||| |||||||| ||||||||||| | || || | || Sbjct 167772 AATTTGGAATCCATAGAAGAATCGAGCTTCTGGAACTTGAACTTCCTGACTGAAACGCTC 167831 Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 | ||| || || ||||| || || ||| || ||||| || || || ||||| || || Sbjct 167832 AATTAAATTCTCATTTACGATGCCATCAGATGCAGCAAAGAAAGCTAATACATGCGAGAT 167891 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| | | || | ||| || || ||||||| || |||||| | |||||| || Sbjct 167892 AAAATGACGCTCTGAATCCTTGAGATTGTTCCAGTCTTCCATATCTTTTGATAAATCGAC 167951 Query 5051 TTCTTCAACAGTCCAAAA 5068 ||| || || ||||| || Sbjct 167952 TTCCTCGACTGTCCAGAA 167969 >seq6 Length=649598 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 31770 TAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTA 31829 |||||||||| || || |||||| | || ||| || || |||||||| || || Sbjct 425283 TAGTTAAAACAGACATCCAAATTGAACTTCCAGAAGGCTGTTATGGACGAATTGCACCAC 425342 Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889 | |||||||| |||| ||| | || || || || ||||| || ||| |||| ||||| Sbjct 425343 GTTCTGGATTAGCAGCAAAAAATTTCATTGATGTTGGTGCTGGAGTTGTAGACGAAGACT 425402 Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921 |||||||||| | || |||| |||||||| Sbjct 425403 ATAGAGGAAATTTAGGTGTTGTCATGTTTAAT 425434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426914148541325